Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1331
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    28   0.99 
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    28   0.99 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   5.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.2  

>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 32  PQTEASPPVIDEEEWNPPPQKKRKSNLTKMFL 127
           P T+  PP  ++E+   P Q K K N+   FL
Sbjct: 88  PSTQQQPPKTEKEKEKEPIQAKHKKNVENDFL 119


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 5   SSQPTVAPLPQTEASPPVIDEEEWNPPPQKKRKSN 109
           SS PTV P   T+  P  +        PQK+R  N
Sbjct: 888 SSSPTVTPTVNTDRQPKTLTNSADELSPQKRRVEN 922


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 2   TSSQPTVAPLPQTEASPPVIDEEEWNPPPQK 94
           +SS  +V+PL  +    P++ + ++ PPP+K
Sbjct: 464 SSSPNSVSPLLPSSDRLPLLRQSQFTPPPKK 494


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 91   LWWRVPLLFVNDWRGSLSLWQWSHCW 14
            +W+ + +   N W  SL+   WS+ W
Sbjct: 2199 VWFCISVFLQNFWLSSLNGRSWSYLW 2224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,240
Number of Sequences: 5004
Number of extensions: 38551
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)