Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1331
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0675 + 27183826-27184443 33 0.25
09_02_0403 + 8590195-8590443,8590583-8590690,8590788-8590901,859... 31 1.0
03_05_0153 + 21299150-21299593,21299733-21299873,21299971-213000... 31 1.0
09_06_0110 + 20923523-20924065 30 1.3
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960... 29 4.1
03_05_0174 + 21509202-21509690,21509696-21510133,21510176-21510643 29 4.1
09_02_0383 - 8259156-8261843 28 5.4
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 28 5.4
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375... 28 5.4
06_03_0305 + 19388745-19388963,19389069-19389209,19389799-193898... 28 7.2
03_01_0060 - 487802-487882,487962-488195,488570-488629 28 7.2
08_02_1256 + 25645085-25645396 27 9.5
>04_04_0675 + 27183826-27184443
Length = 205
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 5 SSQPTVAPLPQTEASPPVIDEEEWNPPPQKKR 100
S+ P+ +P P ASPP + +PPP+K+R
Sbjct: 100 SASPSQSPSPPPPASPPPLPPAPSSPPPKKRR 131
>09_02_0403 +
8590195-8590443,8590583-8590690,8590788-8590901,
8590998-8591210
Length = 227
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 121 HFCQIAFSFFLWWRVPLLFVNDWRGSLSLW 32
HFC+ F F WW VP V D ++W
Sbjct: 154 HFCEALFPFKDWWVVPAKVVFDQTAWSAIW 183
>03_05_0153 +
21299150-21299593,21299733-21299873,21299971-21300084,
21300181-21300354,21300486-21300494
Length = 293
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 121 HFCQIAFSFFLWWRVPLLFVNDWRGSLSLW 32
HFC+ F F WW VP V D ++W
Sbjct: 230 HFCEALFPFKDWWVVPAKVVFDQTAWSAIW 259
>09_06_0110 + 20923523-20924065
Length = 180
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 2 TSSQPTVAPLPQTEASPPVIDEEEWNPPPQKKRKSNLT 115
T QP + PLP +PP W P + K+ S+ T
Sbjct: 40 TPPQPPLLPLPARPHAPPPQQHAAWPAPQRSKKPSHAT 77
>07_01_1074 -
9599465-9599545,9599632-9599690,9600070-9600143,
9600797-9600996,9601074-9601365,9601665-9602411,
9602653-9602696,9602714-9602827,9603590-9603838,
9603922-9603927
Length = 621
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 14 PTVAPLPQTEASPPVIDEEEWNPPPQKKRK 103
PT PLP+ SPP + +PPP + +
Sbjct: 150 PTPPPLPRKSQSPPPAQRKSPSPPPAEHHR 179
>03_05_0174 + 21509202-21509690,21509696-21510133,21510176-21510643
Length = 464
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 20 VAPLPQTEASPPVIDEEEWNPPPQKKRKSNLTK 118
V P + +A+ +DEE W+PP + L K
Sbjct: 226 VPPAEEADATAGAVDEERWSPPQPASPTAALVK 258
>09_02_0383 - 8259156-8261843
Length = 895
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 200 TDLSLIPHIPYHALKHTPLSFCLYLKTFLSN 108
TDL+ I +PY L+H LSFC LK +++
Sbjct: 792 TDLTWIIKLPY--LEHLDLSFCSMLKCIIAD 820
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 2 TSSQPTVAPLPQTEASPPVIDEEEWNPPPQKKRK 103
T +QP T PP DEEE P P ++R+
Sbjct: 239 TPAQPRRRKRAATSDPPPEDDEEEGTPAPPRRRR 272
>05_01_0471 -
3751497-3751522,3751760-3751800,3752466-3752507,
3753249-3753310,3753398-3753584,3753692-3753826,
3753872-3753948,3754005-3754076,3754389-3754588,
3754675-3755020,3755463-3755519,3755655-3757433,
3757539-3757720,3757943-3758072
Length = 1111
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 5 SSQPTVAPLPQTEASPPVIDEEE 73
SS+ T+APLP T+ PVI +++
Sbjct: 166 SSKRTIAPLPSTKRQAPVIPDQK 188
>06_03_0305 +
19388745-19388963,19389069-19389209,19389799-19389836,
19390161-19390227,19392057-19392467
Length = 291
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 5 SSQPTVAPLPQTEASPPVIDEEEWNPPPQKKRK 103
SS + P P T PP + W+PP +++R+
Sbjct: 19 SSSSSSPPTPTT-IPPPPLPSSSWSPPSRRRRR 50
>03_01_0060 - 487802-487882,487962-488195,488570-488629
Length = 124
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 17 TVAPLPQTEASPPVIDEEEWNPPPQKKRKSNLTKMFLDIDRKTREYASE 163
T AP+ +TE V +EEE + + ++ ++ L ID TR+ SE
Sbjct: 55 TTAPMTETEDDMAVAEEEE-VAAASAETEEHVQRILLAIDAFTRQQVSE 102
>08_02_1256 + 25645085-25645396
Length = 103
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 14 PTVAPLPQTEASPPVIDEEEWNPPP 88
P PLP PP +EE +PPP
Sbjct: 65 PPPPPLPSPPPPPPPQQQEEQSPPP 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,428,509
Number of Sequences: 37544
Number of extensions: 223674
Number of successful extensions: 879
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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