Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1331
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_30517| Best HMM Match : HLH (HMM E-Value=6.9e-15)                   29   4.2  
SB_39039| Best HMM Match : Drf_FH1 (HMM E-Value=6.4)                   28   5.6  
SB_20320| Best HMM Match : Endonuclease_7 (HMM E-Value=0.24)           28   5.6  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   28   7.4  
SB_30754| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +2

Query: 35  QTEASPPVIDEEEWNPPPQKKR 100
           +T++ PPV+ + +W PPP++KR
Sbjct: 488 KTKSPPPVMAKRQWPPPPKEKR 509


>SB_30517| Best HMM Match : HLH (HMM E-Value=6.9e-15)
          Length = 178

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 32  PQTEASPPVIDEEEWNPPPQKKRKSNLTKMFLDIDRKTRE 151
           P    + P+  +EE++ PP++KR  N  K  L ++ + RE
Sbjct: 59  PGIAPNSPIKTDEEFHLPPKQKRPRNSLKKRLLVNARERE 98


>SB_39039| Best HMM Match : Drf_FH1 (HMM E-Value=6.4)
          Length = 254

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
 Frame = +2

Query: 11  QPTVA-PLPQTEASP-PVIDEEEWNPP---PQKKRKSNLTK 118
           QPT A PLP+TE  P P  D +  +PP   P+K+R ++ T+
Sbjct: 211 QPTAATPLPETEPEPEPEPDLDLPDPPLETPRKRRHTHNTR 251


>SB_20320| Best HMM Match : Endonuclease_7 (HMM E-Value=0.24)
          Length = 417

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 158 KHTPLSFCLYLKTF 117
           KHTP SFC Y+K F
Sbjct: 248 KHTPSSFCYYIKCF 261


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 41  EASPPVIDEEEWNPPPQKKRKS 106
           EASPP  D + ++ PP+++R+S
Sbjct: 869 EASPPRRDRKRYDSPPRRRRRS 890


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   SSQPTVAPLPQTEASPPVIDEEEWNPPP 88
           +S  T+ PLP  E  P   DEE+  PPP
Sbjct: 443 ASAATLPPLPSDEPPPLPPDEEKPPPPP 470


>SB_30754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 118 FCQIAFSFFLWWRVPLLFVNDWRGSLSL 35
           FC+  F   L+ RV LL V  WR  + L
Sbjct: 171 FCEFHFGLLLFMRVGLLPVLQWRSDVEL 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,573,445
Number of Sequences: 59808
Number of extensions: 253385
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)