Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1331
         (640 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          25   2.0  
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    23   6.2  
U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    23   8.2  
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    23   8.2  
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    23   8.2  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    23   8.2  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    23   8.2  

>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 20  VAPLPQTEASPPVIDEEEWNPPPQKKRKSNLTKM 121
           V  +P TE  PP    E+ +P  Q    ++L++M
Sbjct: 262 VPNIPNTETPPPGYMSEDGDPLDQNDNMTDLSRM 295


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 26  PLPQTEASPPVIDEEEWNPPPQKKR 100
           PLP  EASP         PPP   R
Sbjct: 437 PLPSQEASPSGEQPGRMGPPPPTGR 461


>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 328 LSLHKPHKSFHCLFHK 281
           L++H+P    +CLF K
Sbjct: 298 LTIHQPSSELYCLFDK 313


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 328 LSLHKPHKSFHCLFHK 281
           L++H+P    +CLF K
Sbjct: 298 LTIHQPSSELYCLFDK 313


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 328 LSLHKPHKSFHCLFHK 281
           L++H+P    +CLF K
Sbjct: 276 LTIHQPSSELYCLFDK 291


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 4   KQPTNSGSTATN*GFPS 54
           K PT S + A N GFPS
Sbjct: 100 KSPTVSSAAALNSGFPS 116


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 4   KQPTNSGSTATN*GFPS 54
           K PT S + A N GFPS
Sbjct: 100 KSPTVSSAAALNSGFPS 116


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,074
Number of Sequences: 2352
Number of extensions: 8693
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62723250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)