Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1331
         (640 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC132743-1|AAI32744.1|  473|Homo sapiens potassium channel tetra...    32   2.0  
AK123347-1|BAC85588.1|  473|Homo sapiens protein ( Homo sapiens ...    32   2.0  
BC053892-1|AAH53892.1|  871|Homo sapiens ZNF618 protein protein.       30   8.0  
BC036039-1|AAH36039.1|  544|Homo sapiens ZNF618 protein protein.       30   8.0  
AL162393-4|CAI15243.1|  954|Homo sapiens zinc finger protein 618...    30   8.0  
AL137850-3|CAI15898.1|  954|Homo sapiens zinc finger protein 618...    30   8.0  
AB075832-1|BAB85538.1|  735|Homo sapiens KIAA1952 protein protein.     30   8.0  

>BC132743-1|AAI32744.1|  473|Homo sapiens potassium channel
           tetramerisation domain containing 8 protein.
          Length = 473

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 2   TSSQPTVAPLPQTEASPPVIDEEEWNPPPQKKRKSNLTKMFLDIDRKT 145
           T+ QP    L +     PV    +W PPP K+R S L +  +   R+T
Sbjct: 380 TAHQPNTLTLDRPSKKAPV----QWIPPPDKRRNSELFQTLISKSRET 423


>AK123347-1|BAC85588.1|  473|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41353 fis, clone BRAWH2014662. ).
          Length = 473

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 2   TSSQPTVAPLPQTEASPPVIDEEEWNPPPQKKRKSNLTKMFLDIDRKT 145
           T+ QP    L +     PV    +W PPP K+R S L +  +   R+T
Sbjct: 380 TAHQPNTLTLDRPSKKAPV----QWIPPPDKRRNSELFQTLISKSRET 423


>BC053892-1|AAH53892.1|  871|Homo sapiens ZNF618 protein protein.
          Length = 871

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 47  SPPVIDEEEWNPPPQKKRKSNLTKMFLD----IDRKTREYASER 166
           SPP + EE+W P  Q+   +N T   L     I  K R+  +ER
Sbjct: 346 SPPAVVEEKWKPQAQRNSANNTTTSGLTPNSMIPEKERQNIAER 389


>BC036039-1|AAH36039.1|  544|Homo sapiens ZNF618 protein protein.
          Length = 544

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 47  SPPVIDEEEWNPPPQKKRKSNLTKMFLD----IDRKTREYASER 166
           SPP + EE+W P  Q+   +N T   L     I  K R+  +ER
Sbjct: 19  SPPAVVEEKWKPQAQRNSANNTTTSGLTPNSMIPEKERQNIAER 62


>AL162393-4|CAI15243.1|  954|Homo sapiens zinc finger protein 618
           protein.
          Length = 954

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 47  SPPVIDEEEWNPPPQKKRKSNLTKMFLD----IDRKTREYASER 166
           SPP + EE+W P  Q+   +N T   L     I  K R+  +ER
Sbjct: 429 SPPAVVEEKWKPQAQRNSANNTTTSGLTPNSMIPEKERQNIAER 472


>AL137850-3|CAI15898.1|  954|Homo sapiens zinc finger protein 618
           protein.
          Length = 954

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 47  SPPVIDEEEWNPPPQKKRKSNLTKMFLD----IDRKTREYASER 166
           SPP + EE+W P  Q+   +N T   L     I  K R+  +ER
Sbjct: 429 SPPAVVEEKWKPQAQRNSANNTTTSGLTPNSMIPEKERQNIAER 472


>AB075832-1|BAB85538.1|  735|Homo sapiens KIAA1952 protein protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 47  SPPVIDEEEWNPPPQKKRKSNLTKMFLD----IDRKTREYASER 166
           SPP + EE+W P  Q+   +N T   L     I  K R+  +ER
Sbjct: 210 SPPAVVEEKWKPQAQRNSANNTTTSGLTPNSMIPEKERQNIAER 253


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,705,113
Number of Sequences: 237096
Number of extensions: 1369853
Number of successful extensions: 3371
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3352
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)