Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1330
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    28   1.0  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    26   4.0  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   7.1  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   9.3  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    25   9.3  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   9.3  

>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 193 NIINEVFQKKEVEQKRFLP-SIKNYKVLGETRPSSFGPATYQDFKD 327
           NI+  V  K ++EQK  LP ++KN  + G+   SS   A ++++ D
Sbjct: 204 NIVGRVADKLQLEQKSVLPNAVKN--IDGQDDDSSEQTAAFEEYDD 247


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 520  DCWLLAAVANLTLYRKLFFQVVPDDQ 597
            D W   A  N T+YR + F+ VPDD+
Sbjct: 1220 DIWSKVASNNTTIYRHI-FRCVPDDE 1244


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 642 PETEMEDARIIFIETLIIRYNLEE*LAIKCQVGNGSQQPTIAQLSLL 502
           P+ +++D +II I  L + Y L+    +  ++G G    TIA  SLL
Sbjct: 383 PDIKLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFFSLL 429


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 428 SLGSDLGKSATTLNFSSKATVASTSNKE 511
           SL S+LGK+  T  + SKA V ++++ E
Sbjct: 473 SLSSNLGKTNPTSVYQSKANVTTSADVE 500


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 259 NYKVLGETRPSSFGPATYQDFK 324
           NY V  +TRPS  GP +   F+
Sbjct: 139 NYNVNPDTRPSKIGPPSTSHFQ 160


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 616 HNLHRNSDH-QVQLGRITCDKVSSWQRQPTANNRPTLLV 503
           +N+  NS+  Q   G ++C  V  W   P  +NRP+ L+
Sbjct: 175 YNVDYNSELIQQYAGSVSCH-VLDWMNPPDDDNRPSWLI 212


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 631 NGRRPHNLHRNSDHQVQLGRITCDKVSSWQRQPTANNRPTL 509
           NG    +  R +     +G+   D+V  W   P   NRPT+
Sbjct: 791 NGSSLTSSSRETPANSIIGQGGLDRVVEWMLSPEPRNRPTI 831


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,991
Number of Sequences: 5004
Number of extensions: 57854
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)