Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1330
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 58 6e-09
01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256... 32 0.45
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 31 0.78
07_03_0056 - 12863599-12863715,12864107-12864235,12864322-128644... 31 1.0
06_02_0233 + 13315579-13316046 30 1.4
05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417... 29 2.4
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776... 28 5.5
03_01_0599 + 4416441-4416549,4416854-4417394,4417476-4417939,441... 28 7.3
01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180... 28 7.3
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 58.0 bits (134), Expect = 6e-09
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Frame = +1
Query: 328 IRSRCLAEG-RLFEDPEFPAVDRSLYY---KESLDRPIT--WLRPGEI------SDNPQL 471
+R +A+G R F D EFP DRSL+ SL + W+RP +I S P L
Sbjct: 1627 VREALIAKGERNFTDQEFPPDDRSLFVDPMNPSLKLQVVSEWMRPSDIAKEVSISSQPCL 1686
Query: 472 FVEGYSRFDVQQGELGDCWLLAAVANLTLYRKLFFQVVPDDQSFDEDYAGVFHFRF 639
F + DV QG LGDCW L+AVA LT ++ ++ + ++E+ G++ RF
Sbjct: 1687 FSGSVNSSDVCQGRLGDCWFLSAVAVLTEMARISEVIITPE--YNEE--GIYTVRF 1738
>01_01_0316 +
2565704-2566134,2566682-2566845,2566989-2567152,
2567594-2567720,2568347-2568450
Length = 329
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 452 SATTLNFSSKATVASTSNKESWAIVGC-WLPLPT*HFIASYSSKLYLMIRVSMK--IMRA 622
SAT L + T T++ E W ++ C WL H +A+ S L + IR+ + MR
Sbjct: 142 SATLLKMGALETSKVTNDHEGWRLITCIWLHAGVVHILANMLSLLLIGIRLEKEFGFMRI 201
Query: 623 SSISV 637
++ V
Sbjct: 202 GTLYV 206
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 31.1 bits (67), Expect = 0.78
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = -3
Query: 558 KCQVGNGSQQPTIAQLSLLDVEATVAFDEKLRVVADFPRSEPSDGPVQALLVVEAAVHGR 379
+ VG+G P + ++ EA V + ++ + RS P VVEAA HG+
Sbjct: 85 EANVGSGDSSPAVR----VEEEAEVEAEAEVGTAVEPQRSGTLASPTD---VVEAAQHGQ 137
Query: 378 KLGVFEESTFS*APRSYVFEVLIRSRTE 295
+ +S + +PRSY V+ + E
Sbjct: 138 RQQQASQSQQTPSPRSYAAAVVNKREDE 165
>07_03_0056 -
12863599-12863715,12864107-12864235,12864322-12864408,
12864657-12864848,12864930-12865106,12865174-12865420,
12865510-12865619,12865751-12865851,12865937-12866000,
12866433-12866522,12866621-12866719,12866817-12866897,
12867197-12867535
Length = 610
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 265 KVLGETRPSSFGPATYQDFKDIRSR-CLAEGRLFEDPEFPAVDRSLYY 405
KV G+T P +GP T D++D + R CL E P ++ S Y+
Sbjct: 173 KVWGKTGPKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYF 220
>06_02_0233 + 13315579-13316046
Length = 155
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 643 ARNGNGRRPHNLHRNSDHQVQLGRITCDKVSSWQRQPTANNR 518
A G GRRPH GR++ ++ S WQR+P R
Sbjct: 58 ASRGRGRRPHPAGTAVFGGGVGGRLSAERRSRWQRRPARRER 99
>05_01_0500 -
4171090-4171191,4171989-4172061,4172376-4172701,
4173164-4173555,4174521-4174853,4177118-4177209,
4178052-4178111,4178760-4178903,4180142-4180213,
4180345-4180510,4180776-4180923
Length = 635
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = -3
Query: 567 LAIKCQVGNGSQQPTIAQLSLLDVEATVAFDEKLRVVADFPRSEPS 430
+A+ C + N Q+P++A+++ + E+ + EK + D RS+PS
Sbjct: 502 IALLCTMYNPDQRPSMAEIAGMLQESDGSVVEKWETLKDAERSKPS 547
>01_05_0699 -
24376987-24377154,24377259-24377406,24377530-24377645,
24377743-24377925,24377998-24378186,24378273-24378497,
24378514-24378759,24378836-24378983,24379126-24379241,
24379441-24379497,24379735-24379923,24380001-24380150,
24380323-24380404,24380484-24380601,24380713-24380899,
24381044-24381138,24381223-24381277,24381376-24381567,
24381657-24381853,24382534-24382684
Length = 1003
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 286 PSSFGPATYQDFKDIRSRCLAEGRLFEDPE---FPAVDRSLYYKESLDRPITWLRPGEIS 456
P S P + F D R+ C G L F +DR+L K + + ++ G++
Sbjct: 69 PESILPPSANSFGD-RNNCPVPGTLLNTNNMRGFQNLDRALLLKAEAKKILHDIKSGKVE 127
Query: 457 DNPQLFV 477
+NP L +
Sbjct: 128 ENPALLL 134
>03_01_0599 +
4416441-4416549,4416854-4417394,4417476-4417939,
4418361-4418496,4418616-4418687,4418777-4418845,
4418940-4419011,4419101-4419172,4419359-4419416
Length = 530
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 105 FWRPYTGRGKTVA*SRRPGPTELWCSSPREHH**GVPEERG*TKKVSAQY 254
+W P+T TV P E W P + GV RG KK+S Q+
Sbjct: 226 YWAPFTDANPTVESHSAITPEEFWNVPPAKALRAGVTTSRG--KKLSVQW 273
>01_03_0145 -
13116302-13116958,13117365-13117430,13117786-13118065,
13118283-13119028
Length = 582
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Frame = +3
Query: 39 KNLVSSSESARACY---GRPKWRWEF 107
KN +S AR GRP WRWEF
Sbjct: 107 KNFISKDFHARFFLWRDGRPNWRWEF 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,171,684
Number of Sequences: 37544
Number of extensions: 437735
Number of successful extensions: 1136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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