BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1330 (644 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 58 6e-09 01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256... 32 0.45 02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 31 0.78 07_03_0056 - 12863599-12863715,12864107-12864235,12864322-128644... 31 1.0 06_02_0233 + 13315579-13316046 30 1.4 05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417... 29 2.4 01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776... 28 5.5 03_01_0599 + 4416441-4416549,4416854-4417394,4417476-4417939,441... 28 7.3 01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180... 28 7.3 >02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002, 29363099-29363206,29363583-29363697,29363781-29364819, 29364904-29365014,29365268-29365326,29366601-29366763, 29367162-29367435,29367530-29367680,29367766-29367877, 29367978-29368143,29368261-29368331,29368474-29368565, 29368721-29368883,29369134-29369205,29369236-29369263, 29369519-29369910,29369991-29370106,29370201-29370498, 29370820-29371139,29371332-29371590,29371985-29372302, 29372423-29372527,29372648-29372776,29374001-29374381, 29374467-29374604,29374949-29375185,29375264-29375569 Length = 2094 Score = 58.0 bits (134), Expect = 6e-09 Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 12/116 (10%) Frame = +1 Query: 328 IRSRCLAEG-RLFEDPEFPAVDRSLYY---KESLDRPIT--WLRPGEI------SDNPQL 471 +R +A+G R F D EFP DRSL+ SL + W+RP +I S P L Sbjct: 1627 VREALIAKGERNFTDQEFPPDDRSLFVDPMNPSLKLQVVSEWMRPSDIAKEVSISSQPCL 1686 Query: 472 FVEGYSRFDVQQGELGDCWLLAAVANLTLYRKLFFQVVPDDQSFDEDYAGVFHFRF 639 F + DV QG LGDCW L+AVA LT ++ ++ + ++E+ G++ RF Sbjct: 1687 FSGSVNSSDVCQGRLGDCWFLSAVAVLTEMARISEVIITPE--YNEE--GIYTVRF 1738 >01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152, 2567594-2567720,2568347-2568450 Length = 329 Score = 31.9 bits (69), Expect = 0.45 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Frame = +2 Query: 452 SATTLNFSSKATVASTSNKESWAIVGC-WLPLPT*HFIASYSSKLYLMIRVSMK--IMRA 622 SAT L + T T++ E W ++ C WL H +A+ S L + IR+ + MR Sbjct: 142 SATLLKMGALETSKVTNDHEGWRLITCIWLHAGVVHILANMLSLLLIGIRLEKEFGFMRI 201 Query: 623 SSISV 637 ++ V Sbjct: 202 GTLYV 206 >02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-729714, 729776-729818,730101-730218,730743-730853 Length = 688 Score = 31.1 bits (67), Expect = 0.78 Identities = 24/88 (27%), Positives = 40/88 (45%) Frame = -3 Query: 558 KCQVGNGSQQPTIAQLSLLDVEATVAFDEKLRVVADFPRSEPSDGPVQALLVVEAAVHGR 379 + VG+G P + ++ EA V + ++ + RS P VVEAA HG+ Sbjct: 85 EANVGSGDSSPAVR----VEEEAEVEAEAEVGTAVEPQRSGTLASPTD---VVEAAQHGQ 137 Query: 378 KLGVFEESTFS*APRSYVFEVLIRSRTE 295 + +S + +PRSY V+ + E Sbjct: 138 RQQQASQSQQTPSPRSYAAAVVNKREDE 165 >07_03_0056 - 12863599-12863715,12864107-12864235,12864322-12864408, 12864657-12864848,12864930-12865106,12865174-12865420, 12865510-12865619,12865751-12865851,12865937-12866000, 12866433-12866522,12866621-12866719,12866817-12866897, 12867197-12867535 Length = 610 Score = 30.7 bits (66), Expect = 1.0 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +1 Query: 265 KVLGETRPSSFGPATYQDFKDIRSR-CLAEGRLFEDPEFPAVDRSLYY 405 KV G+T P +GP T D++D + R CL E P ++ S Y+ Sbjct: 173 KVWGKTGPKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYF 220 >06_02_0233 + 13315579-13316046 Length = 155 Score = 30.3 bits (65), Expect = 1.4 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = -2 Query: 643 ARNGNGRRPHNLHRNSDHQVQLGRITCDKVSSWQRQPTANNR 518 A G GRRPH GR++ ++ S WQR+P R Sbjct: 58 ASRGRGRRPHPAGTAVFGGGVGGRLSAERRSRWQRRPARRER 99 >05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701, 4173164-4173555,4174521-4174853,4177118-4177209, 4178052-4178111,4178760-4178903,4180142-4180213, 4180345-4180510,4180776-4180923 Length = 635 Score = 29.5 bits (63), Expect = 2.4 Identities = 14/46 (30%), Positives = 28/46 (60%) Frame = -3 Query: 567 LAIKCQVGNGSQQPTIAQLSLLDVEATVAFDEKLRVVADFPRSEPS 430 +A+ C + N Q+P++A+++ + E+ + EK + D RS+PS Sbjct: 502 IALLCTMYNPDQRPSMAEIAGMLQESDGSVVEKWETLKDAERSKPS 547 >01_05_0699 - 24376987-24377154,24377259-24377406,24377530-24377645, 24377743-24377925,24377998-24378186,24378273-24378497, 24378514-24378759,24378836-24378983,24379126-24379241, 24379441-24379497,24379735-24379923,24380001-24380150, 24380323-24380404,24380484-24380601,24380713-24380899, 24381044-24381138,24381223-24381277,24381376-24381567, 24381657-24381853,24382534-24382684 Length = 1003 Score = 28.3 bits (60), Expect = 5.5 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Frame = +1 Query: 286 PSSFGPATYQDFKDIRSRCLAEGRLFEDPE---FPAVDRSLYYKESLDRPITWLRPGEIS 456 P S P + F D R+ C G L F +DR+L K + + ++ G++ Sbjct: 69 PESILPPSANSFGD-RNNCPVPGTLLNTNNMRGFQNLDRALLLKAEAKKILHDIKSGKVE 127 Query: 457 DNPQLFV 477 +NP L + Sbjct: 128 ENPALLL 134 >03_01_0599 + 4416441-4416549,4416854-4417394,4417476-4417939, 4418361-4418496,4418616-4418687,4418777-4418845, 4418940-4419011,4419101-4419172,4419359-4419416 Length = 530 Score = 27.9 bits (59), Expect = 7.3 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = +3 Query: 105 FWRPYTGRGKTVA*SRRPGPTELWCSSPREHH**GVPEERG*TKKVSAQY 254 +W P+T TV P E W P + GV RG KK+S Q+ Sbjct: 226 YWAPFTDANPTVESHSAITPEEFWNVPPAKALRAGVTTSRG--KKLSVQW 273 >01_03_0145 - 13116302-13116958,13117365-13117430,13117786-13118065, 13118283-13119028 Length = 582 Score = 27.9 bits (59), Expect = 7.3 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%) Frame = +3 Query: 39 KNLVSSSESARACY---GRPKWRWEF 107 KN +S AR GRP WRWEF Sbjct: 107 KNFISKDFHARFFLWRDGRPNWRWEF 132 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,171,684 Number of Sequences: 37544 Number of extensions: 437735 Number of successful extensions: 1136 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1098 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1135 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1596695220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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