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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1330
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    58   6e-09
01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256...    32   0.45 
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72...    31   0.78 
07_03_0056 - 12863599-12863715,12864107-12864235,12864322-128644...    31   1.0  
06_02_0233 + 13315579-13316046                                         30   1.4  
05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417...    29   2.4  
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776...    28   5.5  
03_01_0599 + 4416441-4416549,4416854-4417394,4417476-4417939,441...    28   7.3  
01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180...    28   7.3  

>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
            29363099-29363206,29363583-29363697,29363781-29364819,
            29364904-29365014,29365268-29365326,29366601-29366763,
            29367162-29367435,29367530-29367680,29367766-29367877,
            29367978-29368143,29368261-29368331,29368474-29368565,
            29368721-29368883,29369134-29369205,29369236-29369263,
            29369519-29369910,29369991-29370106,29370201-29370498,
            29370820-29371139,29371332-29371590,29371985-29372302,
            29372423-29372527,29372648-29372776,29374001-29374381,
            29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
 Frame = +1

Query: 328  IRSRCLAEG-RLFEDPEFPAVDRSLYY---KESLDRPIT--WLRPGEI------SDNPQL 471
            +R   +A+G R F D EFP  DRSL+      SL   +   W+RP +I      S  P L
Sbjct: 1627 VREALIAKGERNFTDQEFPPDDRSLFVDPMNPSLKLQVVSEWMRPSDIAKEVSISSQPCL 1686

Query: 472  FVEGYSRFDVQQGELGDCWLLAAVANLTLYRKLFFQVVPDDQSFDEDYAGVFHFRF 639
            F    +  DV QG LGDCW L+AVA LT   ++   ++  +  ++E+  G++  RF
Sbjct: 1687 FSGSVNSSDVCQGRLGDCWFLSAVAVLTEMARISEVIITPE--YNEE--GIYTVRF 1738


>01_01_0316 +
           2565704-2566134,2566682-2566845,2566989-2567152,
           2567594-2567720,2568347-2568450
          Length = 329

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +2

Query: 452 SATTLNFSSKATVASTSNKESWAIVGC-WLPLPT*HFIASYSSKLYLMIRVSMK--IMRA 622
           SAT L   +  T   T++ E W ++ C WL     H +A+  S L + IR+  +   MR 
Sbjct: 142 SATLLKMGALETSKVTNDHEGWRLITCIWLHAGVVHILANMLSLLLIGIRLEKEFGFMRI 201

Query: 623 SSISV 637
            ++ V
Sbjct: 202 GTLYV 206


>02_01_0099 +
           726576-727105,727899-728048,728510-728635,728726-729714,
           729776-729818,730101-730218,730743-730853
          Length = 688

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 24/88 (27%), Positives = 40/88 (45%)
 Frame = -3

Query: 558 KCQVGNGSQQPTIAQLSLLDVEATVAFDEKLRVVADFPRSEPSDGPVQALLVVEAAVHGR 379
           +  VG+G   P +     ++ EA V  + ++    +  RS     P     VVEAA HG+
Sbjct: 85  EANVGSGDSSPAVR----VEEEAEVEAEAEVGTAVEPQRSGTLASPTD---VVEAAQHGQ 137

Query: 378 KLGVFEESTFS*APRSYVFEVLIRSRTE 295
           +     +S  + +PRSY   V+ +   E
Sbjct: 138 RQQQASQSQQTPSPRSYAAAVVNKREDE 165


>07_03_0056 -
           12863599-12863715,12864107-12864235,12864322-12864408,
           12864657-12864848,12864930-12865106,12865174-12865420,
           12865510-12865619,12865751-12865851,12865937-12866000,
           12866433-12866522,12866621-12866719,12866817-12866897,
           12867197-12867535
          Length = 610

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 265 KVLGETRPSSFGPATYQDFKDIRSR-CLAEGRLFEDPEFPAVDRSLYY 405
           KV G+T P  +GP T  D++D + R CL      E P    ++ S Y+
Sbjct: 173 KVWGKTGPKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYF 220


>06_02_0233 + 13315579-13316046
          Length = 155

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 643 ARNGNGRRPHNLHRNSDHQVQLGRITCDKVSSWQRQPTANNR 518
           A  G GRRPH            GR++ ++ S WQR+P    R
Sbjct: 58  ASRGRGRRPHPAGTAVFGGGVGGRLSAERRSRWQRRPARRER 99


>05_01_0500 -
           4171090-4171191,4171989-4172061,4172376-4172701,
           4173164-4173555,4174521-4174853,4177118-4177209,
           4178052-4178111,4178760-4178903,4180142-4180213,
           4180345-4180510,4180776-4180923
          Length = 635

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = -3

Query: 567 LAIKCQVGNGSQQPTIAQLSLLDVEATVAFDEKLRVVADFPRSEPS 430
           +A+ C + N  Q+P++A+++ +  E+  +  EK   + D  RS+PS
Sbjct: 502 IALLCTMYNPDQRPSMAEIAGMLQESDGSVVEKWETLKDAERSKPS 547


>01_05_0699 -
           24376987-24377154,24377259-24377406,24377530-24377645,
           24377743-24377925,24377998-24378186,24378273-24378497,
           24378514-24378759,24378836-24378983,24379126-24379241,
           24379441-24379497,24379735-24379923,24380001-24380150,
           24380323-24380404,24380484-24380601,24380713-24380899,
           24381044-24381138,24381223-24381277,24381376-24381567,
           24381657-24381853,24382534-24382684
          Length = 1003

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +1

Query: 286 PSSFGPATYQDFKDIRSRCLAEGRLFEDPE---FPAVDRSLYYKESLDRPITWLRPGEIS 456
           P S  P +   F D R+ C   G L        F  +DR+L  K    + +  ++ G++ 
Sbjct: 69  PESILPPSANSFGD-RNNCPVPGTLLNTNNMRGFQNLDRALLLKAEAKKILHDIKSGKVE 127

Query: 457 DNPQLFV 477
           +NP L +
Sbjct: 128 ENPALLL 134


>03_01_0599 +
           4416441-4416549,4416854-4417394,4417476-4417939,
           4418361-4418496,4418616-4418687,4418777-4418845,
           4418940-4419011,4419101-4419172,4419359-4419416
          Length = 530

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 105 FWRPYTGRGKTVA*SRRPGPTELWCSSPREHH**GVPEERG*TKKVSAQY 254
           +W P+T    TV       P E W   P +    GV   RG  KK+S Q+
Sbjct: 226 YWAPFTDANPTVESHSAITPEEFWNVPPAKALRAGVTTSRG--KKLSVQW 273


>01_03_0145 -
           13116302-13116958,13117365-13117430,13117786-13118065,
           13118283-13119028
          Length = 582

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +3

Query: 39  KNLVSSSESARACY---GRPKWRWEF 107
           KN +S    AR      GRP WRWEF
Sbjct: 107 KNFISKDFHARFFLWRDGRPNWRWEF 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,171,684
Number of Sequences: 37544
Number of extensions: 437735
Number of successful extensions: 1136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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