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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1330
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0)               106   2e-23
SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0)                93   1e-19
SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   3e-17
SB_31653| Best HMM Match : Peptidase_C2 (HMM E-Value=4.5e-09)          57   1e-08
SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0)                40   0.001
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     30   1.4  
SB_23830| Best HMM Match : Glyoxalase (HMM E-Value=4.1e-08)            30   1.4  
SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 28   7.5  
SB_14990| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.7e-05)         28   7.5  
SB_3896| Best HMM Match : 7tm_1 (HMM E-Value=0.00045)                  28   7.5  
SB_31327| Best HMM Match : GlcNAc_2-epim (HMM E-Value=4.3)             28   7.5  
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)                  27   9.9  
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)                 27   9.9  
SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
          Length = 842

 Score =  106 bits (254), Expect = 2e-23
 Identities = 49/109 (44%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
 Frame = +1

Query: 325 DIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVEGYSRFDVQ 504
           D+R +  + G+ FED EF A+D S+++ +   RP  W RP +I ++P +FV G SR D+Q
Sbjct: 198 DVRRQVRSTGKPFEDDEFLAIDSSIFFSKRPPRPFEWKRPSDICEDPHMFVGGASRLDIQ 257

Query: 505 QGELGDCWLLAAVANLTLYRKLFFQVVPDD---QSFDEDYAGVFHFRFW 642
           QG LGDCWLLAA+A LT +  L  +VVP D      D +Y G   F  W
Sbjct: 258 QGMLGDCWLLAAIAALTQHSALMNKVVPQDYVANPNDRNYTGALKFCIW 306


>SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
          Length = 1133

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 47/109 (43%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
 Frame = +1

Query: 319 FKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVEGYSRFD 498
           F  ++ + L   RLFED +FPA +R L+ +    + I W RP EIS +PQ    G+S  D
Sbjct: 12  FASLQRQLLNSKRLFEDRDFPASNRVLFTRRRSVQLI-WKRPHEISKSPQFIARGFSSSD 70

Query: 499 VQQGELGDCWLLAAVANLTLYRKLFFQVVPDDQSFDE-DYAGVFHFRFW 642
           V QG + +CW +AA+A+LT    L   V P DQSF+   Y G+F F FW
Sbjct: 71  VAQGRIRNCWFVAALADLTTNIDLLHHVCPPDQSFEPGSYCGMFRFNFW 119


>SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
 Frame = +1

Query: 313 QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLD-RPITWLRPGEISDN--PQLFVEG 483
           Q +  +++ C    +LF D  F     SLYY  S    P+ W RP EI     P LFV+G
Sbjct: 10  QRYSKLKAECEKNEQLFVDSVFKPETSSLYYSRSCPPEPVEWKRPSEICHPAVPHLFVDG 69

Query: 484 YSRFDVQQGELGDCWLLAAVANLTLYRKLFFQVVP--DDQSFD----EDYAGVFHFRFW 642
               DV QG+LG+CW +AA ++L L   L ++V+P  D Q +D    E+Y G+F FRF+
Sbjct: 70  ADSHDVTQGKLGNCWFVAACSSLALRPFLLYKVIPDKDKQEWDPKKPENYQGIFRFRFY 128


>SB_31653| Best HMM Match : Peptidase_C2 (HMM E-Value=4.5e-09)
          Length = 208

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
 Frame = +1

Query: 448 EISDNPQLFVEGYSRFDVQQGELGDCWLLAAVANLTLYRKLFFQVVPDD----QSFDEDY 615
           EI   P+ +V+G SR D++QG LG+CWLLAA++ L  ++ L  +++P+       F   Y
Sbjct: 97  EICSEPRFYVDGASRLDIKQGVLGNCWLLAAMSVLAQHKPLVDRIMPEGVYEADRFSPRY 156

Query: 616 AGVFHFRFW 642
            G   F+ W
Sbjct: 157 TGKVVFKLW 165


>SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
          Length = 1001

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
 Frame = +1

Query: 340 CLAEGRLFEDPEFPAVDRSLYYK---ESLDRPITWLRPGEISDN--------PQLFVEGY 486
           C  +   F D  FP V +SLY         R   WLRP EI DN        P       
Sbjct: 431 CKTQEIQFVDDSFPPVLKSLYINPRHSEHPRVADWLRPNEI-DNFSTCRTNIPWAVFRNP 489

Query: 487 SRFDVQQGELGDCWLLAAVANL 552
              D+ QG LGDCW L+++A L
Sbjct: 490 RPSDIIQGVLGDCWFLSSLAVL 511


>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +1

Query: 403 YKESLDRPITWLRPGEISDNPQLFVEGYSRFDVQQGELGDCWLLAAVANLTLYRKLFFQV 582
           ++E++  PI    PG+     Q FV+ Y    VQ   L    ++ A++NL   R + F  
Sbjct: 724 WEETIKMPINEPAPGKRKSQIQEFVDYYGTAGVQHIALNTSDIITAISNLK-ERGMQFLS 782

Query: 583 VPD 591
           +PD
Sbjct: 783 IPD 785


>SB_23830| Best HMM Match : Glyoxalase (HMM E-Value=4.1e-08)
          Length = 306

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +1

Query: 403 YKESLDRPITWLRPGEISDNPQLFVEGYSRFDVQQGELGDCWLLAAVANLTLYRKLFFQV 582
           ++E++  PI    PG+     Q FV+ Y    VQ   L    ++ A++NL   R + F  
Sbjct: 157 WEETIKMPINEPAPGKRKSQIQEFVDYYGTAGVQHIALNTSDIITAISNLK-ERGMQFLS 215

Query: 583 VPD 591
           +PD
Sbjct: 216 IPD 218


>SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 669

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 122 CIRAPKFPPPFWPAIASSRTFT 57
           C RAPK PPP   A+A  R  T
Sbjct: 482 CARAPKMPPPERQALARLRAHT 503


>SB_14990| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.7e-05)
          Length = 333

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 574 FQVVPDDQSFDEDYAGVFHF 633
           F V P DQ +D+D+ G+F+F
Sbjct: 258 FIVDPFDQGWDKDFGGIFYF 277


>SB_3896| Best HMM Match : 7tm_1 (HMM E-Value=0.00045)
          Length = 538

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 530 CWLPLPT*HFIASYSSKLYLMI 595
           CWLP+   HF+ ++  K Y+ +
Sbjct: 440 CWLPVHVNHFLGTFDRKAYICL 461


>SB_31327| Best HMM Match : GlcNAc_2-epim (HMM E-Value=4.3)
          Length = 220

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 574 FQVVPDDQSFDEDYAGVFHF 633
           F V P DQ +D+D+ G+F+F
Sbjct: 57  FIVDPFDQGWDKDFGGIFYF 76


>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
          Length = 429

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 418 PGSPCSRGCGPRPETRGLRRVY 353
           PG  CS+ CG   +TR LR +Y
Sbjct: 365 PGHGCSKSCGDGVKTRELRCLY 386


>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
          Length = 1241

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 202 NEVFQKKEVEQKRFLPSIKNYKVLGETRPSSFGPATYQDFKD 327
           NE + K ++      P  +NYK+L +TR ++ G   +Q  K+
Sbjct: 41  NESWLKSDISSAEVFP--ENYKILRKTRDNNRGGGVFQAVKN 80


>SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1750

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 184 ALGNIINEVFQKKEVEQKRFLPSIK 258
           ++GN+ NE++ K ++ Q   LP+I+
Sbjct: 204 SMGNLANELYDKSKLSQTSLLPAIQ 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,086,669
Number of Sequences: 59808
Number of extensions: 472257
Number of successful extensions: 971
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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