BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1330 (644 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 106 2e-23 SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 93 1e-19 SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 3e-17 SB_31653| Best HMM Match : Peptidase_C2 (HMM E-Value=4.5e-09) 57 1e-08 SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 40 0.001 SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) 30 1.4 SB_23830| Best HMM Match : Glyoxalase (HMM E-Value=4.1e-08) 30 1.4 SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 28 7.5 SB_14990| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.7e-05) 28 7.5 SB_3896| Best HMM Match : 7tm_1 (HMM E-Value=0.00045) 28 7.5 SB_31327| Best HMM Match : GlcNAc_2-epim (HMM E-Value=4.3) 28 7.5 SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 27 9.9 SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32) 27 9.9 SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9 >SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0) Length = 842 Score = 106 bits (254), Expect = 2e-23 Identities = 49/109 (44%), Positives = 67/109 (61%), Gaps = 3/109 (2%) Frame = +1 Query: 325 DIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVEGYSRFDVQ 504 D+R + + G+ FED EF A+D S+++ + RP W RP +I ++P +FV G SR D+Q Sbjct: 198 DVRRQVRSTGKPFEDDEFLAIDSSIFFSKRPPRPFEWKRPSDICEDPHMFVGGASRLDIQ 257 Query: 505 QGELGDCWLLAAVANLTLYRKLFFQVVPDD---QSFDEDYAGVFHFRFW 642 QG LGDCWLLAA+A LT + L +VVP D D +Y G F W Sbjct: 258 QGMLGDCWLLAAIAALTQHSALMNKVVPQDYVANPNDRNYTGALKFCIW 306 >SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0) Length = 1133 Score = 93.5 bits (222), Expect = 1e-19 Identities = 47/109 (43%), Positives = 64/109 (58%), Gaps = 1/109 (0%) Frame = +1 Query: 319 FKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVEGYSRFD 498 F ++ + L RLFED +FPA +R L+ + + I W RP EIS +PQ G+S D Sbjct: 12 FASLQRQLLNSKRLFEDRDFPASNRVLFTRRRSVQLI-WKRPHEISKSPQFIARGFSSSD 70 Query: 499 VQQGELGDCWLLAAVANLTLYRKLFFQVVPDDQSFDE-DYAGVFHFRFW 642 V QG + +CW +AA+A+LT L V P DQSF+ Y G+F F FW Sbjct: 71 VAQGRIRNCWFVAALADLTTNIDLLHHVCPPDQSFEPGSYCGMFRFNFW 119 >SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 825 Score = 85.8 bits (203), Expect = 3e-17 Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 9/119 (7%) Frame = +1 Query: 313 QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLD-RPITWLRPGEISDN--PQLFVEG 483 Q + +++ C +LF D F SLYY S P+ W RP EI P LFV+G Sbjct: 10 QRYSKLKAECEKNEQLFVDSVFKPETSSLYYSRSCPPEPVEWKRPSEICHPAVPHLFVDG 69 Query: 484 YSRFDVQQGELGDCWLLAAVANLTLYRKLFFQVVP--DDQSFD----EDYAGVFHFRFW 642 DV QG+LG+CW +AA ++L L L ++V+P D Q +D E+Y G+F FRF+ Sbjct: 70 ADSHDVTQGKLGNCWFVAACSSLALRPFLLYKVIPDKDKQEWDPKKPENYQGIFRFRFY 128 >SB_31653| Best HMM Match : Peptidase_C2 (HMM E-Value=4.5e-09) Length = 208 Score = 57.2 bits (132), Expect = 1e-08 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Frame = +1 Query: 448 EISDNPQLFVEGYSRFDVQQGELGDCWLLAAVANLTLYRKLFFQVVPDD----QSFDEDY 615 EI P+ +V+G SR D++QG LG+CWLLAA++ L ++ L +++P+ F Y Sbjct: 97 EICSEPRFYVDGASRLDIKQGVLGNCWLLAAMSVLAQHKPLVDRIMPEGVYEADRFSPRY 156 Query: 616 AGVFHFRFW 642 G F+ W Sbjct: 157 TGKVVFKLW 165 >SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0) Length = 1001 Score = 40.3 bits (90), Expect = 0.001 Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 11/82 (13%) Frame = +1 Query: 340 CLAEGRLFEDPEFPAVDRSLYYK---ESLDRPITWLRPGEISDN--------PQLFVEGY 486 C + F D FP V +SLY R WLRP EI DN P Sbjct: 431 CKTQEIQFVDDSFPPVLKSLYINPRHSEHPRVADWLRPNEI-DNFSTCRTNIPWAVFRNP 489 Query: 487 SRFDVQQGELGDCWLLAAVANL 552 D+ QG LGDCW L+++A L Sbjct: 490 RPSDIIQGVLGDCWFLSSLAVL 511 >SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) Length = 808 Score = 30.3 bits (65), Expect = 1.4 Identities = 19/63 (30%), Positives = 31/63 (49%) Frame = +1 Query: 403 YKESLDRPITWLRPGEISDNPQLFVEGYSRFDVQQGELGDCWLLAAVANLTLYRKLFFQV 582 ++E++ PI PG+ Q FV+ Y VQ L ++ A++NL R + F Sbjct: 724 WEETIKMPINEPAPGKRKSQIQEFVDYYGTAGVQHIALNTSDIITAISNLK-ERGMQFLS 782 Query: 583 VPD 591 +PD Sbjct: 783 IPD 785 >SB_23830| Best HMM Match : Glyoxalase (HMM E-Value=4.1e-08) Length = 306 Score = 30.3 bits (65), Expect = 1.4 Identities = 19/63 (30%), Positives = 31/63 (49%) Frame = +1 Query: 403 YKESLDRPITWLRPGEISDNPQLFVEGYSRFDVQQGELGDCWLLAAVANLTLYRKLFFQV 582 ++E++ PI PG+ Q FV+ Y VQ L ++ A++NL R + F Sbjct: 157 WEETIKMPINEPAPGKRKSQIQEFVDYYGTAGVQHIALNTSDIITAISNLK-ERGMQFLS 215 Query: 583 VPD 591 +PD Sbjct: 216 IPD 218 >SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) Length = 669 Score = 27.9 bits (59), Expect = 7.5 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -1 Query: 122 CIRAPKFPPPFWPAIASSRTFT 57 C RAPK PPP A+A R T Sbjct: 482 CARAPKMPPPERQALARLRAHT 503 >SB_14990| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.7e-05) Length = 333 Score = 27.9 bits (59), Expect = 7.5 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +1 Query: 574 FQVVPDDQSFDEDYAGVFHF 633 F V P DQ +D+D+ G+F+F Sbjct: 258 FIVDPFDQGWDKDFGGIFYF 277 >SB_3896| Best HMM Match : 7tm_1 (HMM E-Value=0.00045) Length = 538 Score = 27.9 bits (59), Expect = 7.5 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = +2 Query: 530 CWLPLPT*HFIASYSSKLYLMI 595 CWLP+ HF+ ++ K Y+ + Sbjct: 440 CWLPVHVNHFLGTFDRKAYICL 461 >SB_31327| Best HMM Match : GlcNAc_2-epim (HMM E-Value=4.3) Length = 220 Score = 27.9 bits (59), Expect = 7.5 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +1 Query: 574 FQVVPDDQSFDEDYAGVFHF 633 F V P DQ +D+D+ G+F+F Sbjct: 57 FIVDPFDQGWDKDFGGIFYF 76 >SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) Length = 429 Score = 27.5 bits (58), Expect = 9.9 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 418 PGSPCSRGCGPRPETRGLRRVY 353 PG CS+ CG +TR LR +Y Sbjct: 365 PGHGCSKSCGDGVKTRELRCLY 386 >SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32) Length = 1241 Score = 27.5 bits (58), Expect = 9.9 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +1 Query: 202 NEVFQKKEVEQKRFLPSIKNYKVLGETRPSSFGPATYQDFKD 327 NE + K ++ P +NYK+L +TR ++ G +Q K+ Sbjct: 41 NESWLKSDISSAEVFP--ENYKILRKTRDNNRGGGVFQAVKN 80 >SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1750 Score = 27.5 bits (58), Expect = 9.9 Identities = 9/25 (36%), Positives = 18/25 (72%) Frame = +1 Query: 184 ALGNIINEVFQKKEVEQKRFLPSIK 258 ++GN+ NE++ K ++ Q LP+I+ Sbjct: 204 SMGNLANELYDKSKLSQTSLLPAIQ 228 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,086,669 Number of Sequences: 59808 Number of extensions: 472257 Number of successful extensions: 971 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 911 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 967 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1633044375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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