Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1330
         (644 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeo...    24   3.6  
AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled ...    23   8.3  
AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein...    23   8.3  

>AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeotic
           protein protein.
          Length = 324

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 370 PEFPAVDRSLYYKESLD 420
           P FP  DR  YY++++D
Sbjct: 60  PRFPPYDRMGYYQQTMD 76


>AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled
           receptor protein.
          Length = 611

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 619 PHNLHRNSDHQVQLGRITCDKVSSWQRQPTAN 524
           PH  H+   HQ Q        VS+ Q +  AN
Sbjct: 77  PHQYHQQVQHQPQPPSTPFANVSTGQNESLAN 108


>AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 612

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 619 PHNLHRNSDHQVQLGRITCDKVSSWQRQPTAN 524
           PH  H+   HQ Q        VS+ Q +  AN
Sbjct: 78  PHQYHQQVQHQPQPPSTPFANVSTGQNESLAN 109


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,693
Number of Sequences: 2352
Number of extensions: 14644
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63559560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)