Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1330
(644 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55350.4 68414.m06326 calpain-type cysteine protease family i... 50 1e-06
At1g55350.3 68414.m06325 calpain-type cysteine protease family i... 50 1e-06
At1g55350.2 68414.m06324 calpain-type cysteine protease family i... 50 1e-06
At1g55350.1 68414.m06323 calpain-type cysteine protease family i... 50 1e-06
At4g19140.1 68417.m02824 expressed protein 31 0.65
At5g22300.1 68418.m02601 nitrilase 4 (NIT4) identical to SP|P460... 31 0.87
At5g23980.1 68418.m02818 ferric-chelate reductase, putative simi... 28 4.6
At4g37240.1 68417.m05272 expressed protein 28 6.1
At3g07660.1 68416.m00918 expressed protein 27 8.1
At2g46380.1 68415.m05773 hypothetical protein weak similarity to... 27 8.1
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f... 27 8.1
>At1g55350.4 68414.m06326 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 50.0 bits (114), Expect = 1e-06
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Frame = +1
Query: 361 FEDPEFPAVDRSLYYK-----ESLDRPITWLRPGEI-----SDN-PQLFVEGYSRFDVQQ 507
F D EFP DRSL+ L W+RP I SD+ P LF + DV Q
Sbjct: 1696 FTDQEFPPNDRSLFVDTQNPPSKLQVVSEWMRPDSIVKENGSDSRPCLFSGDANPSDVCQ 1755
Query: 508 GELGDCWLLAAVANLTLYRKLFFQVVPDDQSFDEDYAGVFHFRF 639
G LGDCW L+AVA LT ++ ++ + ++E+ G++ RF
Sbjct: 1756 GRLGDCWFLSAVAVLTEVSRISEVIITPE--YNEE--GIYTVRF 1795
>At1g55350.3 68414.m06325 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 50.0 bits (114), Expect = 1e-06
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Frame = +1
Query: 361 FEDPEFPAVDRSLYYK-----ESLDRPITWLRPGEI-----SDN-PQLFVEGYSRFDVQQ 507
F D EFP DRSL+ L W+RP I SD+ P LF + DV Q
Sbjct: 1696 FTDQEFPPNDRSLFVDTQNPPSKLQVVSEWMRPDSIVKENGSDSRPCLFSGDANPSDVCQ 1755
Query: 508 GELGDCWLLAAVANLTLYRKLFFQVVPDDQSFDEDYAGVFHFRF 639
G LGDCW L+AVA LT ++ ++ + ++E+ G++ RF
Sbjct: 1756 GRLGDCWFLSAVAVLTEVSRISEVIITPE--YNEE--GIYTVRF 1795
>At1g55350.2 68414.m06324 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 50.0 bits (114), Expect = 1e-06
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Frame = +1
Query: 361 FEDPEFPAVDRSLYYK-----ESLDRPITWLRPGEI-----SDN-PQLFVEGYSRFDVQQ 507
F D EFP DRSL+ L W+RP I SD+ P LF + DV Q
Sbjct: 1696 FTDQEFPPNDRSLFVDTQNPPSKLQVVSEWMRPDSIVKENGSDSRPCLFSGDANPSDVCQ 1755
Query: 508 GELGDCWLLAAVANLTLYRKLFFQVVPDDQSFDEDYAGVFHFRF 639
G LGDCW L+AVA LT ++ ++ + ++E+ G++ RF
Sbjct: 1756 GRLGDCWFLSAVAVLTEVSRISEVIITPE--YNEE--GIYTVRF 1795
>At1g55350.1 68414.m06323 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 50.0 bits (114), Expect = 1e-06
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Frame = +1
Query: 361 FEDPEFPAVDRSLYYK-----ESLDRPITWLRPGEI-----SDN-PQLFVEGYSRFDVQQ 507
F D EFP DRSL+ L W+RP I SD+ P LF + DV Q
Sbjct: 1696 FTDQEFPPNDRSLFVDTQNPPSKLQVVSEWMRPDSIVKENGSDSRPCLFSGDANPSDVCQ 1755
Query: 508 GELGDCWLLAAVANLTLYRKLFFQVVPDDQSFDEDYAGVFHFRF 639
G LGDCW L+AVA LT ++ ++ + ++E+ G++ RF
Sbjct: 1756 GRLGDCWFLSAVAVLTEVSRISEVIITPE--YNEE--GIYTVRF 1795
>At4g19140.1 68417.m02824 expressed protein
Length = 303
Score = 31.1 bits (67), Expect = 0.65
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 511 ELGDCWLLAAVANLTLYRKLFFQVVPDDQSFDE 609
E DCW + + LYR FF DD SF +
Sbjct: 165 ETYDCWYTLGIPKIKLYRDSFFGCQADDLSFTD 197
>At5g22300.1 68418.m02601 nitrilase 4 (NIT4) identical to SP|P46011
Nitrilase 4 (EC 3.5.5.1) {Arabidopsis thaliana}
Length = 355
Score = 30.7 bits (66), Expect = 0.87
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -3
Query: 408 LVVEAAVHGRKLGVFEESTFS*APRSYVFEVLIRSRT 298
L+ EAA +G +L VF E+ PR FE+ I SRT
Sbjct: 60 LLSEAAENGSQLVVFPEAFIGGYPRGSTFELAIGSRT 96
>At5g23980.1 68418.m02818 ferric-chelate reductase, putative similar
to ferric-chelate reductase (FRO1) [Pisum sativum]
GI:15341529; contains Pfam profile PF01794: Ferric
reductase like transmembrane component
Length = 699
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 153 SLIKQLFSRALYKGAKIPTAILACHSKLAHFH 58
S+I++L S++ K K+P +L C K H+H
Sbjct: 429 SVIRELISQSQNKSTKLPDVLLVCSFK--HYH 458
>At4g37240.1 68417.m05272 expressed protein
Length = 168
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -2
Query: 601 NSDHQVQLGRITCDKVSSWQRQPTANNRPTLLVGRRSDCSLRRKVEGCR 455
++D ++QLG+I W RQP L + S +R GCR
Sbjct: 61 SADEELQLGQIYFALPLCWLRQPLKAEEMAALAVKASSALMRGGGGGCR 109
>At3g07660.1 68416.m00918 expressed protein
Length = 841
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = -2
Query: 637 NGNGRRPHNLHRNSDHQVQLGRITCDKVSSWQRQPTANNRPT 512
N G RP + + N HQ + + W+ +P N+ T
Sbjct: 278 NSTGSRPSSNYSNRSHQTVGPQRGAGSIKEWKPKPVVNHNTT 319
>At2g46380.1 68415.m05773 hypothetical protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 732
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 367 DPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQL 471
+P F +RS + SL P T++ PG S PQL
Sbjct: 291 NPGFYPHERSFGFGTSLHSPRTFIPPGSQSPGPQL 325
>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc finger
(ZZ type) family protein contains Pfam profiles PF02135:
TAZ zinc finger, PF00569: Zinc finger, ZZ type
Length = 1706
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 604 RNSDHQVQLGRITCDKVSSWQRQPTANNRPTLLVGRRSD 488
+ +D +++ + CDK +WQ Q A L GRR+D
Sbjct: 1028 KKNDEEIEESWVQCDKCQAWQHQICA-----LFNGRRND 1061
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,887,297
Number of Sequences: 28952
Number of extensions: 329736
Number of successful extensions: 799
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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