Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1328
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    27   2.7  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    27   2.7  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    26   6.3  

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 105 DIDGVKYTNDSDYEY 149
           D+D  KY++DSDY Y
Sbjct: 237 DVDSSKYSHDSDYSY 251


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 616 DSEHGNIKSTDRDRSPLVIP 557
           DS +GNIK++  D  P+V+P
Sbjct: 73  DSHYGNIKASVNDIEPIVLP 92


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 455 WDIQISCINKPYSRTNCFNHRKN 387
           WD  +S I++P S     NH  N
Sbjct: 438 WDFSVSAIHRPKSAVYYVNHHSN 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,271
Number of Sequences: 5004
Number of extensions: 60290
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)