Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1328
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0837 - 20925345-20926178                                         29   3.7  
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397...    29   4.9  
04_04_0308 + 24286923-24286927,24288430-24288907,24288980-242890...    29   4.9  

>10_08_0837 - 20925345-20926178
          Length = 277

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 484 HCYFLINMKNNRISGKTSTMLFSTTVSLVDSDLYQLILYY 603
           H Y+L ++K     G  + + FSTTV L D     L++ Y
Sbjct: 38  HHYYLFSIKQLNSFGAAAVLAFSTTVPLSDIAFALLVIPY 77


>06_01_0558 -
           3968211-3969475,3970198-3970266,3970374-3970529,
           3971075-3971405
          Length = 606

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 466 SKLNQQHCYFLINMKNNRISGKTSTMLFSTTVSL 567
           S L+ QH  +LI++ NN +SG   T L    + L
Sbjct: 313 SFLSHQHGLYLIDVSNNNLSGHFPTWLLENNIYL 346


>04_04_0308 +
           24286923-24286927,24288430-24288907,24288980-24289099,
           24289182-24289235,24289467-24289579,24289799-24290011,
           24290123-24290201,24290323-24290376,24290448-24290522,
           24291029-24291193,24291843-24291941,24292186-24292241,
           24292331-24292433,24293289-24293417,24293657-24293835,
           24293953-24293977,24294060-24294175,24294252-24294342
          Length = 717

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 308 IVYCKWNSGTSSRDAYYCSNNIINK 234
           IVYCK+ + T     Y C NNI  K
Sbjct: 348 IVYCKFQAETDFVSKYLCDNNITAK 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,357,940
Number of Sequences: 37544
Number of extensions: 311991
Number of successful extensions: 719
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)