Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1328
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_14762| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)               28   8.8  
SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 603 PCSESYVYITDDTTRDLIVFLASGLAFYENQPRK 704
           P  E YV + D+  +D I  L  GLA ++ Q  K
Sbjct: 194 PADEKYVEMLDEAIKDQIPILEEGLALHQRQATK 227


>SB_14762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 61  IVTLNMSVVGNYFLTILME*NTRMTRITNTKKER 162
           I T    +VGNYFL++L   N ++ RI    K R
Sbjct: 16  ITTDGRCIVGNYFLSLLNVTNNKLQRIQKNMKAR 49


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 63   RNFKYERSWKLFSYDIDGV--KYTNDSDYEYKEGTFQFQNVALEDHEKFLIRQNL 221
            +N++ ++ WK +S D+D +  K     D +Y+    +    AL+ +EK L  + L
Sbjct: 1131 KNWRKKKHWKKYSSDVDALMRKRRRKQDKKYQRELERLNQWALQMNEKKLEHERL 1185


>SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)
          Length = 815

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 225 ESDFVLLETF---HDPLRPRSEIGTFLLCIRNPSHS 127
           + D V  ETF   H PL   S+I  FLLC  +  HS
Sbjct: 169 DGDPVYFETFLSSHQPLLTASDIRRFLLCTVHLDHS 204


>SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 225  ESDFVLLETF---HDPLRPRSEIGTFLLCIRNPSHS 127
            + D V  ETF   H PL   S+I  FLLC  +  HS
Sbjct: 923  DGDPVYFETFLSSHQPLLTASDIRRFLLCTVHLDHS 958


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,044,666
Number of Sequences: 59808
Number of extensions: 398081
Number of successful extensions: 1035
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)