Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1328
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79790.1 68414.m09313 haloacid dehalogenase-like hydrolase fa...    29   2.4  
At1g60530.1 68414.m06814 dynamin family protein similar to mx2 p...    29   2.4  
At1g51110.1 68414.m05746 plastid-lipid associated protein PAP / ...    29   3.1  
At2g33580.1 68415.m04115 protein kinase family protein / peptido...    29   4.1  

>At1g79790.1 68414.m09313 haloacid dehalogenase-like hydrolase
           family protein contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 245

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 102 YDIDGVKYTNDSDYEYKEGTFQ-FQNVALEDHEKFLIRQNLIPYNFIDD 245
           +D++G+K    S Y Y +G  +  Q +A +D E        I YN I+D
Sbjct: 111 FDLEGLKECMRSGYSYLDGMQELLQTLAADDFEIHAFTNYPIWYNIIED 159


>At1g60530.1 68414.m06814 dynamin family protein similar to mx2
           protein GI:5578742 from [Mus musculus musculus];
           contains Pfam profile PF00350: Dynamin family
          Length = 301

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 499 LKSSNAAGLTCFLIPGISRYPVS--TNHILEQIASTIVK 389
           +K +N   LT   +PGI+R PV+    +I EQI+  I+K
Sbjct: 156 VKKNNVPDLTMVDLPGITRVPVNGQPENIYEQISRMIMK 194


>At1g51110.1 68414.m05746 plastid-lipid associated protein PAP /
           fibrillin family protein similar to plastid-lipid
           associated protein PAP2 [Brassica rapa] GI:14248550;
           contains Pfam profile PF04755: PAP_fibrillin
          Length = 409

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -2

Query: 565 VIPLWRKALSMSFLKCGCSSYLLKSSNAAGLTCFLIPGISRYPVS-TNHILEQIASTIVK 389
           +IP +R ++   F+K   S+Y LK  +AA     +I G   YPV  TN+I  +I  T  K
Sbjct: 337 IIPAFRFSMKGKFIKSESSTYDLKMDDAA-----IIGGAFGYPVDITNNIELKILYTDEK 391

Query: 388 TDIN 377
             I+
Sbjct: 392 MRIS 395


>At2g33580.1 68415.m04115 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           protein kinase [Arabidopsis thaliana] GI:2852449;
           contains Pfam profiles PF01476: LysM domain, PF00069:
           Protein kinase domain
          Length = 664

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 466 FLIPGI-SRYPVSTNHILEQIASTIVKTDINSLPT 365
           F+ P + + YP+   + + Q+A + V TD+NS P+
Sbjct: 598 FMDPSLGNEYPLELAYTMAQLAKSCVATDLNSRPS 632


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,045,671
Number of Sequences: 28952
Number of extensions: 282701
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)