Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1325
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 235 5e-63
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 100 4e-22
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 93 2e-20
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 87 2e-18
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 85 1e-17
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 56 3e-09
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 51 1e-07
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 51 2e-07
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 46 4e-06
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 46 5e-06
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 44 3e-05
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 42 1e-04
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 40 2e-04
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 40 3e-04
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 40 4e-04
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 40 4e-04
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 39 7e-04
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 38 0.001
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 36 0.005
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 35 0.012
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 33 0.027
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 32 0.062
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 30 0.33
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.44
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 29 0.44
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.58
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 28 1.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.8
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 27 1.8
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 2.3
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 27 3.1
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 4.1
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 26 4.1
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 4.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 4.1
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 26 5.4
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 26 5.4
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 25 7.2
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 7.2
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 7.2
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 9.5
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 9.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 9.5
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 9.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.5
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 9.5
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 235 bits (574), Expect = 5e-63
Identities = 108/164 (65%), Positives = 139/164 (84%)
Frame = +1
Query: 103 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 282
R+ A + Y+ L++H+E +S+LK+ R +DL K+YDK+E+D+K+LQSVGQI+GEVLKQL
Sbjct: 4 RDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQL 63
Query: 283 TEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 462
E+FIVKA++GPRYVVGCR +D++ L G RV+LDMTTLTIMR LPREVDPLVYNMS
Sbjct: 64 DSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSI 123
Query: 463 EDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
EDPGD++++ +GGL EQIR+LREVIELPL NPELF+RVGI PP+
Sbjct: 124 EDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPK 167
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG LLYGPPGTGKTLLARA
Sbjct: 166 PKGVLLYGPPGTGKTLLARA 185
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 99.5 bits (237), Expect = 4e-22
Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 4/167 (2%)
Frame = +1
Query: 106 EKAFQDYRKKLMEHK----EVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 273
E Q Y +K+ + + + L+ Q L + +++ LQ G VGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 274 KQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYN 453
K + + K +VK +YVV +D ++K RVAL + +++ LP +VDPLV
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 454 MSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
M E D TY +GGL++QI++++EVIELP+ +PELF +GI P+
Sbjct: 134 MMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPK 180
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/29 (79%), Positives = 25/29 (86%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSL-HPKGCLLYGPPGTGKTLLARA 649
LFES+ + PKG LLYGPPGTGKTLLARA
Sbjct: 170 LFESLGIPQPKGILLYGPPGTGKTLLARA 198
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 93.5 bits (222), Expect = 2e-20
Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Frame = +1
Query: 127 RKKLMEHKEVESRLKEG--RDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFI 300
R K +E + L+EG ++ K L ++ +++ ++K +QSV ++G+ L+ + + I
Sbjct: 12 RWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAI 71
Query: 301 VKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDV 480
V +T G YVV LD+ LK VAL + ++ LP E D + + ++ DV
Sbjct: 72 VGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDV 131
Query: 481 TYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
+Y+ +GGL Q +++RE +ELPL +L+ ++GI PP+
Sbjct: 132 SYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPR 169
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +2
Query: 554 TQSCLFESVSLHP-KGCLLYGPPGTGKTLLARA 649
TQ L+ + + P +G LLYGPPGTGKT+L +A
Sbjct: 155 TQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKA 187
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 87.0 bits (206), Expect = 2e-18
Identities = 43/155 (27%), Positives = 87/155 (56%)
Frame = +1
Query: 130 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 309
+++ +H +E + +++LK ++ + N + ++ VG L+++ ++ + +
Sbjct: 73 QRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVG-TLEEIIDDDHAIVS 131
Query: 310 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYS 489
T GP Y V +DK+ L+ G V L ++I+ L + DP++ M + +Y+
Sbjct: 132 TAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYA 191
Query: 490 AIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
IGGL+ QI++++E +ELPL +PEL+ +GI PP+
Sbjct: 192 DIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPK 226
Score = 40.3 bits (90), Expect = 2e-04
Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLHP-KGCLLYGPPGTGKTLLARA 649
L+E + + P KG +LYG PGTGKTLLA+A
Sbjct: 216 LYEEMGIKPPKGVILYGAPGTGKTLLAKA 244
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 84.6 bits (200), Expect = 1e-17
Identities = 39/100 (39%), Positives = 60/100 (60%)
Frame = +1
Query: 295 FIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPG 474
+++ ++VV ++ ++ G RV D I LP ++DP V M E+
Sbjct: 115 YVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKP 174
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
DVTY +GG +EQI +LREV+ELPL++PE FV++GI PP+
Sbjct: 175 DVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPK 214
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG +LYGPPGTGKTL ARA
Sbjct: 213 PKGIMLYGPPGTGKTLCARA 232
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 56.4 bits (130), Expect = 3e-09
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +1
Query: 469 PGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
P VT+S+IGGLQ QI Q+R+++ELP NPELF I PP+
Sbjct: 273 PSAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPR 314
Score = 39.1 bits (87), Expect = 5e-04
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
P+G LLYGPPGTGKT++ RA
Sbjct: 313 PRGVLLYGPPGTGKTMVMRA 332
Score = 39.1 bits (87), Expect = 5e-04
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +1
Query: 463 EDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
E P +V +S IGG +E ++L+E +E PL + E F R+G+ PP+
Sbjct: 541 ESP-NVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPK 583
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG LLYGPPG KT+ A+A
Sbjct: 582 PKGVLLYGPPGCSKTITAKA 601
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 51.2 bits (117), Expect = 1e-07
Identities = 26/82 (31%), Positives = 44/82 (53%)
Frame = +1
Query: 349 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLR 528
++ +L G + ++ + I+ LP E D V M ++ YS IGGL +QI +L
Sbjct: 139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELF 198
Query: 529 EVIELPLMNPELFVRVGITPPQ 594
E I LP+ + F ++G+ PP+
Sbjct: 199 EAIVLPMQQADKFRKLGVKPPK 220
Score = 46.0 bits (104), Expect = 5e-06
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKGCL++GPPGTGKTLLARA
Sbjct: 219 PKGCLMFGPPGTGKTLLARA 238
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = +1
Query: 430 EVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
E +P+ +V Y IGG + Q+ Q+RE++ELPL +P+LF +GI PP+
Sbjct: 205 EGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPR 259
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/29 (65%), Positives = 25/29 (86%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLHP-KGCLLYGPPGTGKTLLARA 649
LF+S+ + P +G L+YGPPGTGKTL+ARA
Sbjct: 249 LFKSIGIKPPRGILMYGPPGTGKTLMARA 277
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITP 588
+V + IGGL+E R+LRE +++P+M E F+R G+TP
Sbjct: 493 NVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTP 530
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
KG L +GPPGTGKTLLA+A
Sbjct: 532 KGVLFFGPPGTGKTLLAKA 550
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 46.4 bits (105), Expect = 4e-06
Identities = 18/40 (45%), Positives = 33/40 (82%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
++ +++IGGL++ I QL+E++ LPL+ PE+F+ + ITPP+
Sbjct: 368 NLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPR 407
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 5/32 (15%)
Frame = +2
Query: 566 LFESVSLH-----PKGCLLYGPPGTGKTLLAR 646
L+ V LH P+G L +GPPGTGKTL+AR
Sbjct: 393 LYPEVFLHLHITPPRGVLFHGPPGTGKTLMAR 424
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 46.0 bits (104), Expect = 5e-06
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = +1
Query: 457 SHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
+ E P D++ S IGGL + I +L E++ +P+ +PE++ GI PP+
Sbjct: 164 NREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPR 209
Score = 39.1 bits (87), Expect = 5e-04
Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLH-PKGCLLYGPPGTGKTLLARA 649
L++SV + P G LL+GPPG GKTLLA+A
Sbjct: 517 LYQSVGISAPTGVLLWGPPGCGKTLLAKA 545
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/29 (51%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLHP-KGCLLYGPPGTGKTLLARA 649
+++ +HP +G LL+GPPG GKT+LA A
Sbjct: 199 VYQYTGIHPPRGVLLHGPPGCGKTMLANA 227
Score = 29.9 bits (64), Expect = 0.33
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 469 PGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPP 591
PG V+++ IG L+ +L+ I P+ PEL+ VGI+ P
Sbjct: 487 PG-VSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAP 526
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 43.6 bits (98), Expect = 3e-05
Identities = 16/39 (41%), Positives = 28/39 (71%)
Frame = +1
Query: 478 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
+++ ++GGL I QL+E++ LPL+ PE+F R + PP+
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPR 301
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
P+G L +GPPGTGKTL+ARA
Sbjct: 300 PRGVLFHGPPGTGKTLMARA 319
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 88 DMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYD 213
+++PL +AFQD K L + V S+L + + D K+ D
Sbjct: 544 ELKPLLNEAFQDIEKTLQKLMPVASKLNPLEEVMYDDPKEND 585
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 587 HPKGCLLYGPPGTGKTLLAR 646
H KG LLYGPPGTGKTL+AR
Sbjct: 303 HVKGILLYGPPGTGKTLIAR 322
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2
Query: 566 LFESVSLHPKGCLLYGPPGTGKTLLARA 649
LF+ + +G LL+GPPGTGKT+LARA
Sbjct: 484 LFQGLREPARGMLLFGPPGTGKTMLARA 511
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQR 597
+V + I GL+ L+E + P + P+LF G+ P R
Sbjct: 455 EVHWDDISGLEFAKHSLKEAVVYPFLRPDLF--QGLREPAR 493
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG LLYGPPG GKT+LA+A
Sbjct: 125 PKGLLLYGPPGCGKTMLAKA 144
Score = 32.7 bits (71), Expect = 0.047
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 567
DV++ IGG+ E + QL + + PL PE+F
Sbjct: 85 DVSFDDIGGMDEHVNQLLQDVLFPLKYPEVF 115
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/26 (73%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +2
Query: 575 SVSLHPK-GCLLYGPPGTGKTLLARA 649
S L P+ G LLYGPPGTGKTLLA+A
Sbjct: 682 SQGLKPRSGVLLYGPPGTGKTLLAKA 707
Score = 34.3 bits (75), Expect = 0.015
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 478 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITP 588
V + IGGL+E LR+ ++LPL PELF + G+ P
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKP 687
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2
Query: 566 LFESVSLHPKGCLLYGPPGTGKTLLARA 649
LF+ + +G LL+GPPGTGKT+LARA
Sbjct: 404 LFQGLREPVQGMLLFGPPGTGKTMLARA 431
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 38.7 bits (86), Expect = 7e-04
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
P+G LL GPPGTGKT+LARA
Sbjct: 300 PRGVLLTGPPGTGKTMLARA 319
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
P+G +L GPPGTGKTLLA+A
Sbjct: 329 PRGAILSGPPGTGKTLLAKA 348
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/77 (25%), Positives = 40/77 (51%)
Frame = +1
Query: 76 ASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQ 255
A+ SD++ + + Y ++L + K++ ++ + Q + + ++Y E L ALQ +
Sbjct: 531 ANLSDVKAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNK 590
Query: 256 IVGEVLKQLTEEKFIVK 306
GEVL+Q+ E K
Sbjct: 591 QKGEVLEQVVAESEAAK 607
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 34.7 bits (76), Expect = 0.012
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 596 GCLLYGPPGTGKTLLARA 649
G LLYGPPGTGK+ LA+A
Sbjct: 164 GILLYGPPGTGKSYLAKA 181
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 567
+V + I GL+ L+E + LP+ P+LF
Sbjct: 125 NVRWDDIAGLENAKEALKETVLLPIKLPQLF 155
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 33.5 bits (73), Expect = 0.027
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 79 STSDMEPLREKAFQDYRK-KLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 243
S + +E ++K F+ Y+K + E K+ E R+K+ LKD T +K + K+++
Sbjct: 48 SMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMR 103
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 32.3 bits (70), Expect = 0.062
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 106 EKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDL 231
+K +D RKKL E +E ES L+ R++L+ +S NDL
Sbjct: 571 DKLVEDVRKKLQEKEEAESSLRSVRERLEIRISLSVQSINDL 612
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 29.9 bits (64), Expect = 0.33
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 593 KGCLLYGPPGTGKT 634
+G LLYGPPG+GKT
Sbjct: 243 RGYLLYGPPGSGKT 256
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 97 PLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQS 246
PL YRK L K+V+ L E + LK L K+ K +ND + L++
Sbjct: 184 PLYPNGQPKYRKILENGKKVKYLLDENGEILKRLVKKEKKLKNDNERLEN 233
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
P G LL+G PG GKT LA A
Sbjct: 640 PTGILLFGYPGCGKTYLASA 659
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.58
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 85 SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLK-ALQSVGQIV 261
S E +RE+ Q KKL + + ++SRL + R Q++ Y S + LK + S+ Q V
Sbjct: 404 SSCETIREEN-QKNIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTV 462
Query: 262 GE 267
E
Sbjct: 463 SE 464
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -1
Query: 257 ICPTLCRAFRSFSLLSYCLVKSFSWSRP---SLSRDSTSLCSMSFFL*SWKA 111
+ PTL R RS S+L + L KSF+ + P + +R T +MS S+ A
Sbjct: 410 VTPTLHRNERSMSVLPFQLAKSFTSALPRRLTFNRTHTKASTMSLPYLSYNA 461
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 142 EHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQ 279
E + +R+ + ++Q+KDL+ D DL+ L+S+ V + K+
Sbjct: 1616 ERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRSLEDSVASLQKE 1661
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2
Query: 602 LLYGPPGTGKT 634
L YGPPGTGKT
Sbjct: 60 LFYGPPGTGKT 70
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = -3
Query: 399 GHVKGNSCSSFKLVFVKLPTTANNVARAISSFYNK-----FFFCELFQDFSNYL 253
GH+ C FK +V N+V +S +Y K FF C L + SN L
Sbjct: 1429 GHLMHLGC--FKNYYVARSMYRNDVTAGLSEYYYKYSTAKFFMCPLCRSLSNVL 1480
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 124 YRKKLMEHKEVESR----LKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTE 288
Y+ K + HKEVE R + EG +L ++ +K++ + LQ Q + LK++ E
Sbjct: 86 YKAKRLSHKEVERRRREAISEGIKELANIVPGCEKNKGSI--LQRTAQYI-RSLKEMEE 141
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +2
Query: 602 LLYGPPGTGKT 634
L++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 602 LLYGPPGTGKTLLARA 649
L GP GTGKTLL +A
Sbjct: 618 LFCGPSGTGKTLLTKA 633
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +1
Query: 178 RDQLKDLTKQYDKSENDLKAL-QSVGQIVGEVL-KQLTEEKFIVKAT 312
RD+L+DL+++ + +NDL+ L Q+V E++ LT+ K I++ +
Sbjct: 40 RDELEDLSEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTS 86
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 569 FESVSLHPKGCLLY-GPPGTGKTLL 640
F + SL C+++ GPPG+GK++L
Sbjct: 2505 FLNFSLTKNRCVIFCGPPGSGKSML 2529
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLL 640
PKG LYG G GKT L
Sbjct: 118 PKGIYLYGDVGCGKTAL 134
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 280 AVSRLLQLFVQHFVGLSGHFHSCHIVWSNLLVGH 179
A + L V GLSG ++ CH WSN + +
Sbjct: 247 AQNNSLDFIVNDHQGLSGDYNLCHF-WSNFEIAN 279
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 88 DMEPLREKAFQDYRKKLMEHKEV 156
D+ L ++ F+D RK L EH+ V
Sbjct: 58 DLNNLSDEQFEDIRKALFEHQVV 80
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2
Query: 602 LLYGPPGTGKTL 637
L+ GPPGTGKT+
Sbjct: 411 LIQGPPGTGKTV 422
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLA 643
K LL GPPG GKT A
Sbjct: 410 KAVLLSGPPGIGKTTAA 426
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2
Query: 602 LLYGPPGTGKT 634
L+ GPPGTGKT
Sbjct: 1290 LIQGPPGTGKT 1300
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 85 SDMEPLREKAFQDYRKKLME-HKEV-ESRLKEGRDQLKDLTKQYDKSENDLKA 237
S ++ + KA ++ RK+ E KE+ +SRL+E + K L K + ++LKA
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKLAKYTEVIISNLKA 403
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2
Query: 602 LLYGPPGTGKT 634
L+ GPPGTGKT
Sbjct: 1149 LIQGPPGTGKT 1159
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 609 YSKHPLGWSDT 577
+ KHPL WSDT
Sbjct: 498 WKKHPLAWSDT 508
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 384 NSCSSFKLVFVKLPTTANNVARAISSFY 301
N C S ++F L A AR SSFY
Sbjct: 1294 NMCQSHHVIFWDLIDVATTFARVDSSFY 1321
>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 9.5
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +1
Query: 100 LREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSE-----NDLKALQSVGQIVG 264
LRE FQ + K + + L RDQ+ DLTK E N LK + S ++
Sbjct: 17 LRENVFQPVIDE--RTKRLSAHL---RDQVNDLTKSSSSKEEGIADNSLKEVSS-SEVSD 70
Query: 265 EVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTR 381
V ++ + K +T+GPR R + K LK G R
Sbjct: 71 NVGMEVDQPKV---STSGPR--DNNRNKWAKKHLKKGKR 104
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 127 RKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKA 237
R +L++ + KE D LK +YD+ EN+LKA
Sbjct: 396 RNQLLQINRNINSTKENSDYLKT---EYDEMENELKA 429
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,377
Number of Sequences: 5004
Number of extensions: 52376
Number of successful extensions: 247
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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