Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1325
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 243 9e-65
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 243 9e-65
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 105 3e-23
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 103 8e-23
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 91 4e-19
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 91 6e-19
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 91 6e-19
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 90 1e-18
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 89 2e-18
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 57 9e-09
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 57 9e-09
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 52 3e-07
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 50 1e-06
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 50 1e-06
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 45 4e-05
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 45 4e-05
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 45 5e-05
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 41 6e-04
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 40 0.001
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 40 0.001
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 40 0.001
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 40 0.001
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 40 0.001
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 40 0.001
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 40 0.001
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 40 0.001
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 40 0.002
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 40 0.002
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 40 0.002
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 39 0.003
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 39 0.003
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 39 0.003
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 39 0.003
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 38 0.004
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 38 0.006
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 38 0.006
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 38 0.006
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 38 0.006
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 38 0.006
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 38 0.006
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 38 0.006
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 38 0.006
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 38 0.008
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 37 0.013
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 37 0.013
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 36 0.018
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 36 0.018
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 36 0.023
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 35 0.041
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 35 0.041
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 35 0.041
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 35 0.054
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 33 0.12
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 33 0.12
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 33 0.22
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 33 0.22
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 32 0.29
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 32 0.38
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 32 0.38
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 32 0.38
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 32 0.38
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 32 0.38
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 32 0.38
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 32 0.38
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 31 0.50
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 31 0.50
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 31 0.50
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 31 0.50
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 31 0.50
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 31 0.50
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 31 0.66
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 31 0.66
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 31 0.66
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 31 0.66
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 31 0.88
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 31 0.88
At5g60070.1 68418.m07532 ankyrin repeat family protein contains ... 30 1.2
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 30 1.2
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 30 1.5
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 30 1.5
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 30 1.5
At2g33793.1 68415.m04145 expressed protein 30 1.5
At1g51940.1 68414.m05855 protein kinase family protein / peptido... 30 1.5
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 30 1.5
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 29 2.0
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 29 2.0
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 29 2.0
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 29 2.0
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 29 2.0
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 29 2.0
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 29 2.0
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 29 2.7
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 29 2.7
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg... 29 2.7
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 29 2.7
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 29 2.7
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 29 2.7
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 29 3.5
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 29 3.5
At5g53450.2 68418.m06643 protein kinase family protein contains ... 28 4.7
At5g53450.1 68418.m06642 protein kinase family protein contains ... 28 4.7
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 28 4.7
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 28 4.7
At5g48660.1 68418.m06022 expressed protein ; expression supporte... 28 6.2
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 28 6.2
At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5... 28 6.2
At1g68780.1 68414.m07862 leucine-rich repeat family protein cont... 28 6.2
At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR ... 28 6.2
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 27 8.2
At3g48670.2 68416.m05314 XH/XS domain-containing protein / XS zi... 27 8.2
At3g48670.1 68416.m05313 XH/XS domain-containing protein / XS zi... 27 8.2
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 27 8.2
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 27 8.2
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 27 8.2
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 243 bits (594), Expect = 9e-65
Identities = 110/164 (67%), Positives = 140/164 (85%)
Frame = +1
Query: 103 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 282
R A +YRKKL++HKE+ESR++ R+ L+ K+++K+E+DLK+LQSVGQI+GEVL+ L
Sbjct: 11 RTAAVSEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPL 70
Query: 283 TEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 462
E+ IVKA++GPRYVVGCR ++DK KL GTRV LDMTTLTIMR LPREVDP+VYNM H
Sbjct: 71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLH 130
Query: 463 EDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
EDPG+++YSA+GGL +QIR+LRE IELPLMNPELF+RVGI PP+
Sbjct: 131 EDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPK 174
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG LLYGPPGTGKTLLARA
Sbjct: 173 PKGVLLYGPPGTGKTLLARA 192
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 243 bits (594), Expect = 9e-65
Identities = 111/164 (67%), Positives = 139/164 (84%)
Frame = +1
Query: 103 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 282
R A DYRKKL+ HKE+ESR++ R+ L+ K+++K+E+DLK+LQSVGQI+GEVL+ L
Sbjct: 11 RTAAVTDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPL 70
Query: 283 TEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 462
E+ IVKA++GPRYVVGCR ++DK KL GTRV LDMTTLTIMR LPREVDP+VYNM H
Sbjct: 71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLH 130
Query: 463 EDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
EDPG+++YSA+GGL +QIR+LRE IELPLMNPELF+RVGI PP+
Sbjct: 131 EDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPK 174
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG LLYGPPGTGKTLLARA
Sbjct: 173 PKGVLLYGPPGTGKTLLARA 192
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 105 bits (251), Expect = 3e-23
Identities = 60/173 (34%), Positives = 92/173 (53%)
Frame = +1
Query: 76 ASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQ 255
A+ E L++ Q + + ++ + L Q +L + +L+ LQ G
Sbjct: 24 AAAKQGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGS 83
Query: 256 IVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREV 435
VGEV+K + + K +VK +YVV + +D K+ TRVAL + + LP +V
Sbjct: 84 YVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKV 143
Query: 436 DPLVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
DPLV M E D TY IGGL +QI++++EVIELP+ +PELF +GI P+
Sbjct: 144 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPK 196
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/29 (79%), Positives = 25/29 (86%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSL-HPKGCLLYGPPGTGKTLLARA 649
LFES+ + PKG LLYGPPGTGKTLLARA
Sbjct: 186 LFESLGIAQPKGVLLYGPPGTGKTLLARA 214
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 103 bits (248), Expect = 8e-23
Identities = 61/159 (38%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Frame = +1
Query: 121 DYRKKLMEHKEVE-SRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKF 297
D ++L K +RL+ R++L + +L+ LQ G VGEV+K + + K
Sbjct: 41 DELQRLQREKSYNLNRLEAQRNELNSRVRML---REELQLLQEPGSYVGEVVKVMGKNKV 97
Query: 298 IVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGD 477
+VK +YVV + +D KL TRVAL + + LP +VDPLV M E D
Sbjct: 98 LVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPD 157
Query: 478 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
TY IGGL +QI++++EVIELP+ +PELF +GI P+
Sbjct: 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPK 196
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/29 (79%), Positives = 25/29 (86%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSL-HPKGCLLYGPPGTGKTLLARA 649
LFES+ + PKG LLYGPPGTGKTLLARA
Sbjct: 186 LFESLGIAQPKGVLLYGPPGTGKTLLARA 214
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 91.5 bits (217), Expect = 4e-19
Identities = 45/111 (40%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +1
Query: 265 EVLKQLTEE-KFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDP 441
+++ TE+ K++V +YVVG + ++ G RV +D I LP ++DP
Sbjct: 130 QIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDP 189
Query: 442 LVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
V M+ E+ D TYS IGG +EQI ++REV+ELP+++PE FVR+GI PP+
Sbjct: 190 SVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPK 240
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG L YGPPG+GKTL+ARA
Sbjct: 239 PKGVLCYGPPGSGKTLVARA 258
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 91.1 bits (216), Expect = 6e-19
Identities = 46/155 (29%), Positives = 89/155 (57%)
Frame = +1
Query: 130 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 309
+++ ++ +E +++LK ++ ++ + + L+ VG + + + E IV +
Sbjct: 69 ERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSS 128
Query: 310 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYS 489
+ GP Y VG +DK++L+ G + + L+++ L EVDP+V M E +Y+
Sbjct: 129 SVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYA 188
Query: 490 AIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
IGGL+ QI++++E +ELPL +PEL+ +GI PP+
Sbjct: 189 DIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPK 223
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLHP-KGCLLYGPPGTGKTLLARA 649
L+E + + P KG +LYG PGTGKTLLA+A
Sbjct: 213 LYEDIGIKPPKGVILYGEPGTGKTLLAKA 241
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 91.1 bits (216), Expect = 6e-19
Identities = 46/155 (29%), Positives = 89/155 (57%)
Frame = +1
Query: 130 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 309
+++ ++ +E +++LK ++ ++ + + L+ VG + + + E IV +
Sbjct: 69 ERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSS 128
Query: 310 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYS 489
+ GP Y VG +DK++L+ G + + L+++ L EVDP+V M E +Y+
Sbjct: 129 SVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYA 188
Query: 490 AIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
IGGL+ QI++++E +ELPL +PEL+ +GI PP+
Sbjct: 189 DIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPK 223
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLHP-KGCLLYGPPGTGKTLLARA 649
L+E + + P KG +LYG PGTGKTLLA+A
Sbjct: 213 LYEDIGIKPPKGVILYGEPGTGKTLLAKA 241
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 90.2 bits (214), Expect = 1e-18
Identities = 51/175 (29%), Positives = 97/175 (55%)
Frame = +1
Query: 70 MPASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSV 249
M ST+D E L + R+ +E +++ +D+ K+L ++ +++ ++K +QSV
Sbjct: 20 MDLSTADEEDLYGRLKSLERQ--LEFTDIQEEYV--KDEQKNLKRELLRAQEEVKRIQSV 75
Query: 250 GQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPR 429
++G+ ++ + + IV +T G Y V +++ LK VAL + ++ LP
Sbjct: 76 PLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPP 135
Query: 430 EVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
E D + +S + DV+Y+ IGG Q +++RE +ELPL + EL+ ++GI PP+
Sbjct: 136 EADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR 190
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/29 (58%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLHP-KGCLLYGPPGTGKTLLARA 649
L++ + + P +G LLYGPPGTGKT+LA+A
Sbjct: 180 LYKQIGIDPPRGVLLYGPPGTGKTMLAKA 208
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 89.0 bits (211), Expect = 2e-18
Identities = 41/111 (36%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Frame = +1
Query: 265 EVLKQLTEE-KFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDP 441
+++ TE+ K+++ ++VVG ++ ++ G RV +D I LP ++DP
Sbjct: 93 KIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152
Query: 442 LVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
V M+ E+ DVTY+ +GG +EQI ++REV+ELP+++PE FV++GI PP+
Sbjct: 153 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPK 203
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG L YGPPGTGKTLLARA
Sbjct: 202 PKGVLCYGPPGTGKTLLARA 221
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 57.2 bits (132), Expect = 9e-09
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +1
Query: 349 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLR 528
+D + LK G V ++ + I+ LP E D V M ++ Y+ IGGL++QI++L
Sbjct: 125 VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 184
Query: 529 EVIELPLMNPELFVRVGITPPQ 594
E I LP+ + E F ++G+ PP+
Sbjct: 185 EAIVLPMTHKERFEKLGVRPPK 206
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/28 (71%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +2
Query: 569 FESVSLHP-KGCLLYGPPGTGKTLLARA 649
FE + + P KG LLYGPPGTGKTL+ARA
Sbjct: 197 FEKLGVRPPKGVLLYGPPGTGKTLMARA 224
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 57.2 bits (132), Expect = 9e-09
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +1
Query: 349 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLR 528
+D + LK G V ++ + I+ LP E D V M ++ Y+ IGGL++QI++L
Sbjct: 124 VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 183
Query: 529 EVIELPLMNPELFVRVGITPPQ 594
E I LP+ + E F ++GI PP+
Sbjct: 184 EAIVLPMTHKEQFEKLGIRPPK 205
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/28 (71%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +2
Query: 569 FESVSLHP-KGCLLYGPPGTGKTLLARA 649
FE + + P KG LLYGPPGTGKTL+ARA
Sbjct: 196 FEKLGIRPPKGVLLYGPPGTGKTLMARA 223
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 52.0 bits (119), Expect = 3e-07
Identities = 19/40 (47%), Positives = 32/40 (80%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
DV Y +GG+++Q+ Q+RE++ELPL +P+LF +G+ PP+
Sbjct: 203 DVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 242
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/29 (68%), Positives = 25/29 (86%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLHP-KGCLLYGPPGTGKTLLARA 649
LF+S+ + P KG LLYGPPG+GKTL+ARA
Sbjct: 232 LFKSIGVKPPKGILLYGPPGSGKTLIARA 260
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 569 FESVSLHP-KGCLLYGPPGTGKTLLARA 649
FE + P KG L YGPPG GKTLLA+A
Sbjct: 506 FEKFGMSPSKGVLFYGPPGCGKTLLAKA 533
Score = 37.1 bits (82), Expect = 0.010
Identities = 14/38 (36%), Positives = 28/38 (73%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITP 588
+V+++ IGGL+ R+L+E ++ P+ +PE F + G++P
Sbjct: 476 NVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP 513
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 50.4 bits (115), Expect = 1e-06
Identities = 18/40 (45%), Positives = 32/40 (80%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
+V Y +GG+++Q+ Q+RE++ELPL +P+LF +G+ PP+
Sbjct: 203 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 242
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/29 (68%), Positives = 25/29 (86%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLHP-KGCLLYGPPGTGKTLLARA 649
LF+S+ + P KG LLYGPPG+GKTL+ARA
Sbjct: 232 LFKSIGVKPPKGILLYGPPGSGKTLIARA 260
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 569 FESVSLHP-KGCLLYGPPGTGKTLLARA 649
FE + P KG L YGPPG GKTLLA+A
Sbjct: 506 FEKFGMSPSKGVLFYGPPGCGKTLLAKA 533
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITP 588
+V++ IGGL+ R+L+E ++ P+ +PE F + G++P
Sbjct: 476 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP 513
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 50.4 bits (115), Expect = 1e-06
Identities = 18/40 (45%), Positives = 32/40 (80%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
+V Y +GG+++Q+ Q+RE++ELPL +P+LF +G+ PP+
Sbjct: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 243
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/29 (68%), Positives = 25/29 (86%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLHP-KGCLLYGPPGTGKTLLARA 649
LF+S+ + P KG LLYGPPG+GKTL+ARA
Sbjct: 233 LFKSIGVKPPKGILLYGPPGSGKTLIARA 261
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 569 FESVSLHP-KGCLLYGPPGTGKTLLARA 649
FE + P KG L YGPPG GKTLLA+A
Sbjct: 507 FEKFGMSPSKGVLFYGPPGCGKTLLAKA 534
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITP 588
+V++ IGGL+ R+L+E ++ P+ +PE F + G++P
Sbjct: 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP 514
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKGCLL GPPGTGKTLLARA
Sbjct: 283 PKGCLLVGPPGTGKTLLARA 302
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKGCLL GPPGTGKTLLARA
Sbjct: 295 PKGCLLVGPPGTGKTLLARA 314
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
D+ + IGGL E I L+E++ PL+ PE F ITPP+
Sbjct: 377 DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPR 416
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/28 (67%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Frame = +2
Query: 569 FESVSLHP-KGCLLYGPPGTGKTLLARA 649
F S S+ P +G LL GPPGTGKTL+ARA
Sbjct: 407 FASYSITPPRGVLLCGPPGTGKTLIARA 434
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG LL+GPPGTGKTLLA+A
Sbjct: 349 PKGVLLHGPPGTGKTLLAKA 368
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG LL GPPGTGKTLLA+A
Sbjct: 355 PKGALLVGPPGTGKTLLAKA 374
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG LL GPPGTGKT+LARA
Sbjct: 260 PKGVLLVGPPGTGKTMLARA 279
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG LL GPPGTGKTLLA+A
Sbjct: 360 PKGALLVGPPGTGKTLLAKA 379
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2
Query: 587 HPKGCLLYGPPGTGKTLLAR 646
H KG LL+GPPGTGKTL+AR
Sbjct: 249 HVKGMLLFGPPGTGKTLMAR 268
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
P+G LL GPPGTGKTLLARA
Sbjct: 367 PRGVLLVGPPGTGKTLLARA 386
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG LL GPPGTGKTLLA+A
Sbjct: 260 PKGVLLIGPPGTGKTLLAKA 279
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG LL GPPGTGKTLLA+A
Sbjct: 253 PKGVLLVGPPGTGKTLLAKA 272
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/28 (67%), Positives = 20/28 (71%)
Frame = +2
Query: 566 LFESVSLHPKGCLLYGPPGTGKTLLARA 649
LF S G LLYGPPGTGKTLLA+A
Sbjct: 683 LFSSGLRKRSGVLLYGPPGTGKTLLAKA 710
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
KG LLYGPPGTGKT+LA+A
Sbjct: 123 KGVLLYGPPGTGKTMLAKA 141
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQR 597
DV + +IGGL+ + L E++ LPL PELF + PQ+
Sbjct: 83 DVEFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQK 123
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG LL GPPGTGKTLLA+A
Sbjct: 256 PKGVLLTGPPGTGKTLLAKA 275
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
KG LLYGPPGTGKT+LA+A
Sbjct: 120 KGVLLYGPPGTGKTMLAKA 138
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 436 DPLVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQR 597
D + ++ + D DV + +IGGL+ + L E++ LPL PELF + PQ+
Sbjct: 67 DVIACDVINPDHIDVEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQK 120
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
P+G LLYGPPGTGKT L RA
Sbjct: 56 PRGLLLYGPPGTGKTSLVRA 75
Score = 35.9 bits (79), Expect = 0.023
Identities = 13/37 (35%), Positives = 27/37 (72%)
Frame = +1
Query: 478 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITP 588
VT+ +GGL++ ++L++ +E P+ + FV++GI+P
Sbjct: 283 VTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISP 319
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 560 SCLFESVSLHP-KGCLLYGPPGTGKTLLARA 649
S F + + P +G LL+GPPG KT LA+A
Sbjct: 309 SAAFVKMGISPMRGILLHGPPGCSKTTLAKA 339
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
KG LL+GPPGTGKTLLA+A
Sbjct: 186 KGILLFGPPGTGKTLLAKA 204
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 469 PGD--VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPP 591
PG+ V + IG L+ + L E++ LP+ PELF R + P
Sbjct: 142 PGEIGVKFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRP 184
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +2
Query: 569 FESVSLHPKGCLLYGPPGTGKTLLARA 649
F+ + KG L++GPPGTGKTLLA+A
Sbjct: 265 FQGIRRPWKGVLMFGPPGTGKTLLAKA 291
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
KG LL+GPPGTGKTLLA+A
Sbjct: 387 KGILLFGPPGTGKTLLAKA 405
Score = 34.7 bits (76), Expect = 0.054
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 15/194 (7%)
Frame = +1
Query: 55 FKLFTMPASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLK 234
+KLFT P E + ++K+L E + R+ R + +L K ++ E
Sbjct: 201 YKLFTNVMRLHP--PKEEDTLRLFKKQLGEDR----RIVISRSNINELLKALEEHELLCT 254
Query: 235 ALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIM 414
L V G +L + EK I A N Y+ C L K R +L+++ +
Sbjct: 255 DLYQVNTD-GVILTKQKAEKAIGWAKN--HYLASCPVPLVKGGRLSLPRESLEISIARLR 311
Query: 415 RHLPREVDPL--VYNMSHED-----------PGD--VTYSAIGGLQEQIRQLREVIELPL 549
+ + P + N++ ++ PG+ V + IG L++ + L E++ LP+
Sbjct: 312 KLEDNSLKPSQNLKNIAKDEYERNFVSAVVAPGEIGVKFEDIGALEDVKKALNELVILPM 371
Query: 550 MNPELFVRVGITPP 591
PELF R + P
Sbjct: 372 RRPELFARGNLLRP 385
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 478 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQRMFAV 609
+T++ + G+ E +L E++E L NPE +VR+G PP+ + V
Sbjct: 322 ITFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLV 364
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
P+G LL G PGTGKTLLA+A
Sbjct: 358 PRGVLLVGLPGTGKTLLAKA 377
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/29 (58%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLHP-KGCLLYGPPGTGKTLLARA 649
LF+ L P +G LL+GPPGTGKT++A+A
Sbjct: 439 LFKGGLLKPCRGILLFGPPGTGKTMMAKA 467
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 478 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQR 597
VT++ IG L E L+E++ LPL P+LF + G+ P R
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLF-KGGLLKPCR 449
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
KG LL+GPPGTGKT+LA+A
Sbjct: 856 KGILLFGPPGTGKTMLAKA 874
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPP 591
DVT+ IG L++ L+E++ LPL PELF + +T P
Sbjct: 816 DVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKP 854
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
KG LL+GPPGTGKT+LA+A
Sbjct: 999 KGILLFGPPGTGKTMLAKA 1017
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 478 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQR 597
V++ IG L+ L+E++ LPL PELF + +T P +
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTK 999
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
KG LL+GPPGTGKT+LA+A
Sbjct: 146 KGILLFGPPGTGKTMLAKA 164
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
KG LL+GPPGTGKT+LA+A
Sbjct: 137 KGILLFGPPGTGKTMLAKA 155
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/29 (62%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLHP-KGCLLYGPPGTGKTLLARA 649
LF L P +G LL+GPPGTGKT+LA+A
Sbjct: 546 LFTGGLLKPCRGILLFGPPGTGKTMLAKA 574
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQR 597
+VT+ IG L E L+E++ LPL P+LF G+ P R
Sbjct: 517 NVTFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCR 556
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/29 (62%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLHP-KGCLLYGPPGTGKTLLARA 649
LF L P +G LL+GPPGTGKT+LA+A
Sbjct: 541 LFTGGLLKPCRGILLFGPPGTGKTMLAKA 569
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQR 597
+VT+ IG L E L+E++ LPL P+LF G+ P R
Sbjct: 512 NVTFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCR 551
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
KG LL+GPPGTGKT+LA+A
Sbjct: 986 KGILLFGPPGTGKTMLAKA 1004
Score = 34.7 bits (76), Expect = 0.054
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 478 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQR 597
V++S IG L+ L+E++ LPL PELF + +T P +
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTK 986
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +1
Query: 466 DPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQRMFAV 609
D +T++ + G+ E +L E++E L NP+ +VR+G PP+ + V
Sbjct: 322 DGETITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLLV 368
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
P+G LL G PGTGKTLLA+A
Sbjct: 362 PRGVLLVGLPGTGKTLLAKA 381
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/25 (68%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +2
Query: 575 SVSLHP-KGCLLYGPPGTGKTLLAR 646
S+ L P KG L++GPPGTGKT LAR
Sbjct: 412 SLGLRPTKGVLIHGPPGTGKTSLAR 436
Score = 34.3 bits (75), Expect = 0.071
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
P G L++GPPG KTL+ARA
Sbjct: 758 PSGILMFGPPGCSKTLMARA 777
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 478 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPP 591
V + +GG E QL E +E P + + F R+G PP
Sbjct: 721 VNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPP 758
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 36.7 bits (81), Expect = 0.013
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +1
Query: 484 YSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQ 594
+ ++ GL+ + ++EV+ +PL+ PE F +G+TPP+
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPR 754
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/28 (57%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Frame = +2
Query: 569 FESVSLHP-KGCLLYGPPGTGKTLLARA 649
F+++ L P +G LL+G PGTGKTL+ RA
Sbjct: 745 FDNLGLTPPRGILLHGHPGTGKTLVVRA 772
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
PKG LL G PGTGKTLLA+A
Sbjct: 395 PKGILLTGAPGTGKTLLAKA 414
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 566 LFESVSLHPKGCLLYGPPGTGKTLLARA 649
LF + +G LL+GPPG GKT+LA+A
Sbjct: 241 LFTGLRRPARGLLLFGPPGNGKTMLAKA 268
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 566 LFESVSLHPKGCLLYGPPGTGKTLLARA 649
+F+ KG LL+GPPGTGKT++ +A
Sbjct: 35 IFKGCRSPGKGLLLFGPPGTGKTMIGKA 62
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 35.1 bits (77), Expect = 0.041
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
P L+YGPPG+GKT+LARA
Sbjct: 593 PGHILIYGPPGSGKTILARA 612
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 35.1 bits (77), Expect = 0.041
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = +1
Query: 478 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPP 591
V ++ + G+ E + +L+E+++ L NP+LF ++GI PP
Sbjct: 427 VKFADVAGIDEAVDELQELVKY-LKNPDLFDKMGIKPP 463
Score = 34.7 bits (76), Expect = 0.054
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 566 LFESVSLHPK-GCLLYGPPGTGKTLLARA 649
LF+ + + P G LL GPPG GKTL+A+A
Sbjct: 454 LFDKMGIKPPHGVLLEGPPGCGKTLVAKA 482
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 35.1 bits (77), Expect = 0.041
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 481 TYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPP 591
T+ GG+++ + +L + P++NPE F ++G+ PP
Sbjct: 231 TFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPP 267
Score = 34.7 bits (76), Expect = 0.054
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 596 GCLLYGPPGTGKTLLARA 649
G LLYGPPG GKTL+A+A
Sbjct: 564 GFLLYGPPGCGKTLIAKA 581
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
P G L +GPPG GKT LA A
Sbjct: 267 PSGILFHGPPGCGKTKLANA 286
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +2
Query: 590 PKGCLLYGPPGTGKTLLARA 649
P G LL GPPG GKTLLA+A
Sbjct: 443 PGGILLCGPPGVGKTLLAKA 462
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGKT L A
Sbjct: 246 RGYLLYGPPGTGKTSLVAA 264
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLAR 646
+G LL GPPGTGKTL AR
Sbjct: 527 RGVLLSGPPGTGKTLFAR 544
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 602 LLYGPPGTGKTLLARA 649
LLYGPPGTGK+ LA+A
Sbjct: 169 LLYGPPGTGKSYLAKA 184
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 596 GCLLYGPPGTGKTLLARA 649
G LL+GP GTGKT+LA+A
Sbjct: 772 GILLFGPSGTGKTMLAKA 789
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 478 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPP 591
VT+ IG L+ L+E++ LP PELF + +T P
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKP 769
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 187 LKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEK 294
L D KQY + D+K+++ +G+ GE K +T E+
Sbjct: 74 LDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEE 109
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ L A
Sbjct: 254 RGYLLYGPPGTGKSSLVAA 272
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ L A
Sbjct: 254 RGYLLYGPPGTGKSSLVAA 272
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ L A
Sbjct: 246 RGYLLYGPPGTGKSSLVAA 264
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLAR 646
+ L YGPPGTGKT+ AR
Sbjct: 399 RNILFYGPPGTGKTMAAR 416
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 31.9 bits (69), Expect = 0.38
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLAR 646
+ + YGPPGTGKT++AR
Sbjct: 371 RNMMFYGPPGTGKTMVAR 388
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ L A
Sbjct: 32 RGYLLYGPPGTGKSSLVAA 50
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 31.9 bits (69), Expect = 0.38
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLAR 646
+ + YGPPGTGKT++AR
Sbjct: 386 RNMMFYGPPGTGKTMVAR 403
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ L A
Sbjct: 239 RGYLLYGPPGTGKSSLIAA 257
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ L A
Sbjct: 248 RGYLLYGPPGTGKSSLIAA 266
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ L A
Sbjct: 300 RGYLLYGPPGTGKSSLIAA 318
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLAR 646
+ LL+GPPGTGKT+ AR
Sbjct: 398 RNILLHGPPGTGKTMAAR 415
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ L A
Sbjct: 244 RGYLLYGPPGTGKSSLIAA 262
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ L A
Sbjct: 245 RGYLLYGPPGTGKSSLIAA 263
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ + A
Sbjct: 242 RGYLLYGPPGTGKSTMISA 260
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ + A
Sbjct: 237 RGYLLYGPPGTGKSTMIAA 255
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ + A
Sbjct: 237 RGYLLYGPPGTGKSTMIAA 255
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ + A
Sbjct: 240 RGYLLYGPPGTGKSSMVAA 258
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ + A
Sbjct: 238 RGYLLYGPPGTGKSSMIAA 256
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LLYGPPGTGK+ + A
Sbjct: 238 RGYLLYGPPGTGKSSMIAA 256
>At5g60070.1 68418.m07532 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 548
Score = 30.3 bits (65), Expect = 1.2
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +1
Query: 148 KEVESRLKEGRDQLKD-LTKQYDKSENDLKALQSVG--QIVGEVLKQLTEEKFIVKATNG 318
KE+ S E D+L+D L KQ E L G +V E++K E KA NG
Sbjct: 49 KEILSNHMESEDELRDLLRKQNQCGETALYVAAEYGDADVVAELIKYYDLEDAETKARNG 108
Query: 319 --PRYVVGCRRQLDKNKLKGGTRVALDMT 399
P ++ + +LD ++ L MT
Sbjct: 109 FDPFHIAAKQGELDVLRVLMEEHPELSMT 137
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 602 LLYGPPGTGKTLLARA 649
LL+GPPGTGKT L +A
Sbjct: 206 LLHGPPGTGKTSLCKA 221
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLA 643
K LL GPPGTGKT LA
Sbjct: 67 KALLLAGPPGTGKTALA 83
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 581 SLHPKGCLLYGPPGTGKTLLAR 646
S P+ L GPPGTGKT AR
Sbjct: 358 SNRPRAVLFEGPPGTGKTSCAR 379
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 29.9 bits (64), Expect = 1.5
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Frame = +1
Query: 58 KLFTMPASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQ-LKDLTKQYDK--SEND 228
KL T+P S SD+ P + R+KL + +E++ KE + LK+L ++ S ++
Sbjct: 383 KLRTVPLSESDIFPSSFHKTPEGRRKLTK-EELQKFTKESTENALKELVSSPEEGSSGSE 441
Query: 229 LKALQSVGQIVGEVLKQLTEEKFIVKATNGP 321
+A + + VGE K+ +++ K N P
Sbjct: 442 KQAARGTSEPVGECTKK-KKQRVRYKERNKP 471
>At2g33793.1 68415.m04145 expressed protein
Length = 212
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 85 SDMEPLREKAFQDYRKKLMEH-KEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIV 261
S ++ REKA +D RKK E V + +K D+LK +K + +N KAL +
Sbjct: 45 SALQQFREKAHEDGRKKKEESISSVSTEVKSKIDELK--SKLEKERQNFSKALSKSSKEC 102
Query: 262 GEVLK 276
+LK
Sbjct: 103 ENILK 107
>At1g51940.1 68414.m05855 protein kinase family protein /
peptidoglycan-binding LysM domain-containing protein
contains protein kinases ATP-binding region signature,
PROSITE:PS00107
Length = 651
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -1
Query: 227 SFSLLSYCLVKSFSWSRPSLSRDSTSLCS--MSFFL*SWKAFSLNGSMSDVL 78
+F + L+ SFS S+P D+T LCS ++F ++FS+ SM DVL
Sbjct: 4 TFYIFFLSLLPSFSSSKPMNCSDTTRLCSSFLAFKPNQNQSFSVIQSMFDVL 55
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 572 ESVSLHPKGCLLYGPPGTGKTLLAR 646
++V L LL GP G+GKTLLA+
Sbjct: 302 DNVELDKSNVLLMGPTGSGKTLLAK 326
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 572 ESVSLHPKGCLLYGPPGTGKTLLAR 646
+ V L LL GP G+GKTLLA+
Sbjct: 217 DMVELEKSNILLMGPTGSGKTLLAK 241
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LL+GPPGTGK+ + A
Sbjct: 244 RGYLLFGPPGTGKSTMIAA 262
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LL+GPPGTGK+ + A
Sbjct: 241 RGYLLFGPPGTGKSTMIAA 259
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LL+GPPGTGK+ + A
Sbjct: 240 RGYLLFGPPGTGKSTMISA 258
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LL+GPPGTGK+ + A
Sbjct: 229 RGYLLFGPPGTGKSTMISA 247
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LL+GPPGTGK+ + A
Sbjct: 244 RGYLLFGPPGTGKSTMIAA 262
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 79 STSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSEN 225
ST E R++ F+DY L KE +R+K+ + +D+ +++DK +
Sbjct: 797 STIGDESFRKRCFEDYVSLL---KEQSNRIKQNKKVPEDVREEHDKGRD 842
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 572 ESVSLHPKGCLLYGPPGTGKTLLAR 646
+ V L LL GP G+GKTLLA+
Sbjct: 256 DHVELDKSNVLLLGPTGSGKTLLAK 280
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 593 KGCLLYGPPGTGKTLLARA 649
+G LL+GPPGTGK+ + A
Sbjct: 237 RGYLLHGPPGTGKSTMIAA 255
>At1g78700.1 68414.m09173 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 325
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 265 EVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVA 387
EVLK L E + +G Y GC R +++ ++ GG+ A
Sbjct: 50 EVLKALCNEAGWIVEPDGTTYRKGCSRPVERMEIGGGSATA 90
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 602 LLYGPPGTGKT 634
LLYGPPGTGKT
Sbjct: 76 LLYGPPGTGKT 86
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +2
Query: 602 LLYGPPGTGKTLLARA 649
L YGPPGTGKT A A
Sbjct: 34 LFYGPPGTGKTTTALA 49
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +2
Query: 602 LLYGPPGTGKTLLARA 649
L YGPPGTGKT A A
Sbjct: 46 LFYGPPGTGKTTTALA 61
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = +1
Query: 148 KEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFI 300
+E+++RLK+ + L + T D + + L+++GQ++ + QL + K +
Sbjct: 245 QELQARLKDSQRVLGEATSDADLPRSAHEKLRAMGQVLAKAKMQLYDCKLV 295
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 475 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPQRMF 603
+V ++ + GL+ + L+E + LP+ P+ F I P+ +F
Sbjct: 89 NVKWTVVAGLESAKQALKEAVILPVNFPQFFTARAIYDPRDVF 131
>At5g53450.2 68418.m06643 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 590
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 94 EPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 273
E L EK + KK++ KE S L K ++ + + + N + S G ++GEV
Sbjct: 489 EGLAEKLETEKWKKVVPFKEFPSSLPVA----KLVSGEIEVTMNMNDHIDSPGSVIGEVR 544
Query: 274 KQLTEEKF 297
KQ+ E F
Sbjct: 545 KQIPPEMF 552
>At5g53450.1 68418.m06642 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 670
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 94 EPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 273
E L EK + KK++ KE S L K ++ + + + N + S G ++GEV
Sbjct: 569 EGLAEKLETEKWKKVVPFKEFPSSLPVA----KLVSGEIEVTMNMNDHIDSPGSVIGEVR 624
Query: 274 KQLTEEKF 297
KQ+ E F
Sbjct: 625 KQIPPEMF 632
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 118 QDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ----SVGQIVGEVLKQLT 285
+D + + K++E +L++ ++ D+TK+ + S N + LQ + +++ + K+L
Sbjct: 344 EDLKHVKQKIKKLEDKLEKDSSKIGDMTKESEDSSNLIPKLQENIPKLQKVLLDEEKKLE 403
Query: 286 EEKFIVKA-TNGPR 324
E K I K T G R
Sbjct: 404 EIKAIAKVETEGYR 417
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 130 KKLMEH-KEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 306
K + +H K E RLK+ +K L + S DLK ++V + + + +T+E+ +K
Sbjct: 773 KSIKDHDKNREGRLKDLEKNIKTLKARIQASSKDLKGHENVRERLVMEQEAVTQEQSYLK 832
Query: 307 A 309
+
Sbjct: 833 S 833
>At5g48660.1 68418.m06022 expressed protein ; expression supported
by MPSS
Length = 219
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = +1
Query: 85 SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 243
++++ EKA ++ ++ ++ + RLK+ + K+ K+ + +E + ALQ
Sbjct: 137 TELKEKEEKASKEIKQLQVKLSSITERLKKAETESKEKEKKLETAETHVTALQ 189
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 605 LYGPPGTGKTLLARA 649
LYGPPGTGK+ L A
Sbjct: 225 LYGPPGTGKSSLVAA 239
>At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5
protein GI:2251085 from [Arabidopsis thaliana]
Length = 168
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 166 LKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEK 294
L E +++KDL + + E L LQ+ Q++ +LK T K
Sbjct: 113 LSELENRVKDLENKNSELEERLSTLQNENQMLRHILKNTTGNK 155
>At1g68780.1 68414.m07862 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 432
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +1
Query: 388 LDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPEL 564
LD++ + LPRE++ L N++ D + S GGL ++I+++ ++EL L N L
Sbjct: 248 LDLSNNYLEGKLPRELESLK-NLTLLDLRNNRLS--GGLSKEIQEMTSLVELVLSNNRL 303
>At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 893
Score = 27.9 bits (59), Expect = 6.2
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 103 REKAFQDYRKKLMEHKEVE-SRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQ 279
R +D L+ ++VE RL R K+LT Y ++ L+ V ++ GEV
Sbjct: 75 RVATVEDIIITLLRDRDVEIQRLCLCRFCSKNLTTSYRYGKSVFLRLREVEKLKGEVFGV 134
Query: 280 LTEEKFIVKATNGPRY--VVGCRRQLDK 357
+TE+ P +VG ++ LDK
Sbjct: 135 ITEQASTSAFEERPLQPTIVGQKKMLDK 162
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 151 EVESRLKEGRDQLKDLTKQYDKSENDLKALQSV 249
++++R+ E DQL DLT + ++E D + Q+V
Sbjct: 478 KLKTRIAELEDQLSDLTAERYENERDSRLTQAV 510
>At3g48670.2 68416.m05314 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 647
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 130 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEK 294
K + E E E+R +E Q +L + ++ + D+K ++ + + E L QL EEK
Sbjct: 251 KTIAELTEEEARKQELLVQ--NLRQLVEEKKKDMKEIEELCSVKSEELNQLMEEK 303
>At3g48670.1 68416.m05313 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 647
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 130 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEK 294
K + E E E+R +E Q +L + ++ + D+K ++ + + E L QL EEK
Sbjct: 251 KTIAELTEEEARKQELLVQ--NLRQLVEEKKKDMKEIEELCSVKSEELNQLMEEK 303
>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
identical to SP|Q9SMV7 DNA mismatch repair protein
MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
thaliana}; GC donor splice site at exon 11
Length = 1109
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 575 SVSLHPKGCLLYGPPGTGKTLLARA 649
S S+HP+ LL GP GK+ L RA
Sbjct: 841 SGSIHPRSLLLTGPNMGGKSTLLRA 865
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 569 FESVSL---HPKGCLLYGPPGTGKTLLAR 646
FE VSL + LLYGP G+GK+ L R
Sbjct: 343 FEMVSLAVSQKRPVLLYGPSGSGKSALIR 371
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 142 EHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 306
EH+E+ +LKE + +L + +K ++ K L ++ GE L ++ VK
Sbjct: 154 EHQEILKKLKESDEICGNLRVETEKLTSENKELNEKLEVAGETESDLNQKLEDVK 208
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,893,209
Number of Sequences: 28952
Number of extensions: 277140
Number of successful extensions: 1305
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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