Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1322
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    51   9e-08
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    28   0.69 
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   1.2  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    25   4.9  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   4.9  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.5  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   8.5  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 51.2 bits (117), Expect = 9e-08
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
 Frame = +2

Query: 5   STDNDIRSQAEDAYNNIPTETKVVHLVNSIQN-ADIAED--VRQTAAVLLRRLF-----S 160
           S DN +R+ AE + ++     +   L+N +   A  +ED  VR    VL RR+       
Sbjct: 22  SPDNTVRNDAEKSLSSDWISQRADLLLNGLAILAYQSEDPAVRSFCLVLCRRISFRTLPG 81

Query: 161 AXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPE 340
                         +  L+ QLL     +    +R K+CD ++E+AR+  D  G  +WPE
Sbjct: 82  DSELEVFSSISNESKQSLQSQLLACFVKESVPTVRNKLCDTIAEIARSIYDCQG--EWPE 139

Query: 341 FLQFMFTCASAQDPNIKEAGIRMFTSVP 424
            +  +F   ++ D + +E+  R  TS+P
Sbjct: 140 LINVIFNAVNSPDESFRESVFRTITSLP 167


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 355 VYLCQCARSKHQRSWYSNVYVCTRCIWK 438
           ++LC+   S H RS+  ++ +C +C+ K
Sbjct: 243 IFLCKVLESSHLRSFAEDLSMCFKCVKK 270


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 67  CFCWNVVVCVLCL 29
           CF W++ +C+LCL
Sbjct: 215 CFLWSIYICLLCL 227


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 459 SKFSVWRFPNTPGT 418
           SK S W+FPNTP T
Sbjct: 163 SKSSGWQFPNTPVT 176


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 5   STDNDIRSQAEDAYNNIP-TETKVVHLVNSIQNADIAE 115
           S  ++IR    D YNNIP ++T    +  +I  A I E
Sbjct: 101 SATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILE 138


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 497 LVAKQILTCLLSHPSFQCGDFQ 432
           LV  +   CLLS P  +CGD +
Sbjct: 245 LVLLETKICLLSVPQIECGDLK 266


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 454 VFSVAISKYTWYRRKHSNTSF 392
           V  + +S Y W RR H  TSF
Sbjct: 256 VAPILLSYYVWRRRIHFETSF 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,688
Number of Sequences: 5004
Number of extensions: 44276
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)