Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1322
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852...    70   9e-13
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038...    70   1e-12
01_07_0224 - 42121011-42122486                                         28   4.9  
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259...    27   8.6  
08_02_1602 - 28148255-28149413,28151927-28152087                       27   8.6  
04_03_0620 - 18088287-18088495,18089174-18089210,18089315-180893...    27   8.6  
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    27   8.6  

>03_02_0441 -
           8517501-8517701,8518004-8518139,8519995-8520107,
           8520189-8520284,8520376-8520590,8520675-8520797,
           8520887-8520917,8521020-8521079,8521951-8522106,
           8522185-8522274,8522347-8522562,8522671-8522805,
           8522898-8523401,8523485-8523700,8524411-8524456,
           8524542-8524678,8525059-8525191,8526084-8526358
          Length = 960

 Score = 70.1 bits (164), Expect = 9e-13
 Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 1/169 (0%)
 Frame = +2

Query: 2   LSTDNDIRSQAEDAYNNIPTETKVVH-LVNSIQNADIAEDVRQTAAVLLRRLFSAXXXXX 178
           L  DND R QAE+    +  + +VV  LV+ ++ A    +VRQ AAVLLR+  ++     
Sbjct: 13  LMPDNDARRQAEEQIRRLARDPQVVPALVHHLRTAK-TPNVRQLAAVLLRKKITSHWPKL 71

Query: 179 XXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMF 358
                   +  L++ L+ ++ +D S  +RR   +VVS +A+  +      +WPE L F+F
Sbjct: 72  PPHA----KASLKQALIDSITIDHSHLVRRASANVVSIIAKYAVPA---GEWPELLPFIF 124

Query: 359 TCASAQDPNIKEAGIRMFTSVPGVFGNRHTENLDVIKGMLISALQPNES 505
            C+ +   + +E  + +F+S+    G     +L+ ++ +L+  LQ   S
Sbjct: 125 QCSQSPQEDHREVALILFSSLTETIGTTFQSHLNDLQPILLKCLQDEAS 173


>07_03_0997 -
           23203166-23203330,23203627-23203693,23203771-23203862,
           23204820-23204956,23205050-23205116,23205212-23205278,
           23205356-23205441,23206061-23206153,23206337-23206522,
           23207316-23207372,23207455-23207582,23207662-23207731,
           23207815-23207950,23208378-23208529,23208606-23208680,
           23208765-23208929,23209063-23209128,23209229-23209333,
           23209929-23210132,23210462-23211715
          Length = 1123

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
 Frame = +2

Query: 2   LSTDNDIRSQAEDAYNNIP---TETKVVHLVNSIQNADIAEDVRQTAAVLLRRLFS---- 160
           +S+ N  R+ AE A++ +     E   + L +S+ +     D+R  AAVLLR+L S    
Sbjct: 29  MSSSNADRAAAEAAFHRLRGSHPEPLALRLASSLSSPATPADLRAMAAVLLRKLLSPTPS 88

Query: 161 -----AXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGN 325
                A             Q  L++ LL  LQ D  + + +KVCD +SELA   + +   
Sbjct: 89  SDASSAAAAPVWPHLSPAGQAALKQHLLSALQSDPPKPIAKKVCDAISELAALLLPE--- 145

Query: 326 NQWPEFLQFMFTCASAQD-PNIKEAGIRMFTSVPGVFGNRHTENLDVIKGMLISAL 490
           N W E L F+F  AS  + PN++E+ + +F  +         ++L  I  +L SAL
Sbjct: 146 NAWAELLPFLFRAASGPEAPNLQESALLIFARLADYIAESLLDHLMTIHNLLASAL 201


>01_07_0224 - 42121011-42122486
          Length = 491

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 290 ELARNHIDDDGNNQWPEFLQFMF 358
           +L    ++D G  +WP F+QF F
Sbjct: 7   DLGGGGVEDGGGKKWPGFVQFFF 29


>11_01_0346 -
           2589111-2589220,2589613-2589852,2589956-2590028,
           2590301-2590606,2590698-2590912,2591461-2591755,
           2591901-2592065,2592142-2592738,2593029-2593115,
           2593203-2593523,2594047-2596071
          Length = 1477

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 340 VPTVHVYLCQCARSKHQRSWY 402
           V  V ++ C+C  S  QR WY
Sbjct: 343 VLAVTIFFCKCCESLSQRQWY 363


>08_02_1602 - 28148255-28149413,28151927-28152087
          Length = 439

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 370 CARSKHQRSWYSNVYVCTRC 429
           CA++ ++RS    +YVC RC
Sbjct: 336 CAKNHYKRSHCPKMYVCNRC 355


>04_03_0620 -
           18088287-18088495,18089174-18089210,18089315-18089395,
           18089771-18089838,18093361-18094219
          Length = 417

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 486 ADINMPFITSKFSVWRFPNTPGTDVNIRIPASLMFGSCALAQVNMNCRNSGHWL 325
           A + +  IT   +V   P+T    V+I  P S+  G CA+    + C+NS  +L
Sbjct: 9   ASLELGLITGG-AVAECPDTKCGSVDIPYPFSIGPGRCAMPGFELACKNSRPFL 61


>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
            18303723-18303836,18303903-18304046,18316147-18316312,
            18316396-18317130,18317219-18317422,18317496-18318177,
            18318272-18318528,18318604-18319298,18319345-18319382,
            18319847-18319928,18320018-18320112,18320443-18320526,
            18320601-18320891,18321521-18321853,18321948-18322150,
            18322243-18322399,18322482-18322585,18322675-18322835,
            18323511-18323824,18324317-18324589,18324666-18324967,
            18325459-18325549,18326140-18326190,18326700-18326768,
            18326926-18327017,18327082-18327148,18328582-18328746,
            18329027-18329103,18329572-18329766,18330208-18330275,
            18331081-18331172,18331399-18331522,18331608-18331705,
            18332384-18332997,18333620-18333626
          Length = 2892

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 35   EDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLRRLF 157
            ED+Y+N+P   +V+   N   +  I ++V +    +LRR F
Sbjct: 2820 EDSYHNLPPLLEVMQARNPGTHMAILDEVNEYGENVLRRAF 2860


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,058,104
Number of Sequences: 37544
Number of extensions: 284781
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)