Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1322
(505 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT003793-1|AAO41476.1| 1000|Drosophila melanogaster GH07384p pro... 179 2e-45
AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA ... 179 2e-45
AY071174-1|AAL48796.1| 195|Drosophila melanogaster RE22911p pro... 30 2.0
AE014297-1902|AAX52952.1| 1357|Drosophila melanogaster CG33555-P... 30 2.0
AE014297-892|AAF54348.1| 195|Drosophila melanogaster CG9740-PA ... 30 2.0
U57758-1|AAB49932.1| 360|Drosophila melanogaster putative thyro... 28 6.2
AY069836-1|AAL39981.1| 444|Drosophila melanogaster SD08021p pro... 28 6.2
AF129079-1|AAD28604.1| 444|Drosophila melanogaster COP9 signalo... 28 6.2
AE014296-335|AAF47551.2| 858|Drosophila melanogaster CG7991-PA ... 28 6.2
AE014134-1594|AAF52736.1| 444|Drosophila melanogaster CG9556-PB... 28 6.2
AE014134-1593|AAN10685.1| 444|Drosophila melanogaster CG9556-PA... 28 6.2
>BT003793-1|AAO41476.1| 1000|Drosophila melanogaster GH07384p
protein.
Length = 1000
Score = 179 bits (435), Expect = 2e-45
Identities = 80/163 (49%), Positives = 116/163 (71%)
Frame = +2
Query: 2 LSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLRRLFSAXXXXXX 181
LSTDND+R QAE+AYNN+ E KV HL+ +IQN +E+ RQ AAVLLRRLF+
Sbjct: 16 LSTDNDVRQQAEEAYNNLSRELKVTHLLGNIQNGQQSEEARQMAAVLLRRLFTTEFFDFY 75
Query: 182 XXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFT 361
Q L +Q+LL +Q +++ LRRK+C+VV+E+ARN ID+D NNQWP+ LQF+F
Sbjct: 76 KGLPAESQNQLLQQILLAVQQEVTPQLRRKICEVVAEVARNLIDEDCNNQWPDILQFLFQ 135
Query: 362 CASAQDPNIKEAGIRMFTSVPGVFGNRHTENLDVIKGMLISAL 490
CA++ P ++E+ +R+F+SVP +FGN+ + +D+IK ML ++
Sbjct: 136 CANSPTPQLQESALRIFSSVPSIFGNQEAQYIDLIKQMLAKSM 178
>AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA
protein.
Length = 1105
Score = 179 bits (435), Expect = 2e-45
Identities = 80/163 (49%), Positives = 116/163 (71%)
Frame = +2
Query: 2 LSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLRRLFSAXXXXXX 181
LSTDND+R QAE+AYNN+ E KV HL+ +IQN +E+ RQ AAVLLRRLF+
Sbjct: 16 LSTDNDVRQQAEEAYNNLSRELKVTHLLGNIQNGQQSEEARQMAAVLLRRLFTTEFFDFY 75
Query: 182 XXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFT 361
Q L +Q+LL +Q +++ LRRK+C+VV+E+ARN ID+D NNQWP+ LQF+F
Sbjct: 76 KGLPAESQNQLLQQILLAVQQEVTPQLRRKICEVVAEVARNLIDEDCNNQWPDILQFLFQ 135
Query: 362 CASAQDPNIKEAGIRMFTSVPGVFGNRHTENLDVIKGMLISAL 490
CA++ P ++E+ +R+F+SVP +FGN+ + +D+IK ML ++
Sbjct: 136 CANSPTPQLQESALRIFSSVPSIFGNQEAQYIDLIKQMLAKSM 178
>AY071174-1|AAL48796.1| 195|Drosophila melanogaster RE22911p
protein.
Length = 195
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 67 KSSAPSEFNSKCRHCRRCASN 129
K P ++ + C HCR+C SN
Sbjct: 32 KDGEPKKYRALCTHCRKCQSN 52
>AE014297-1902|AAX52952.1| 1357|Drosophila melanogaster CG33555-PA,
isoform A protein.
Length = 1357
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 40 RIQQHSNRNK-SSAPSEFNSKCRHCRRCASNGGRAVTKII*CRI 168
+++QH+N N +S PS RHC RC + GR + CR+
Sbjct: 10 QLEQHNNHNAHTSDPS------RHCARCTTELGRITNRGAPCRV 47
>AE014297-892|AAF54348.1| 195|Drosophila melanogaster CG9740-PA
protein.
Length = 195
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 67 KSSAPSEFNSKCRHCRRCASN 129
K P ++ + C HCR+C SN
Sbjct: 32 KDGEPKKYRALCTHCRKCQSN 52
>U57758-1|AAB49932.1| 360|Drosophila melanogaster putative thyroid
receptor interactingprotein protein.
Length = 360
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 14 NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 115
N SQ Y N P + +LVNS QN DI E
Sbjct: 293 NPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326
>AY069836-1|AAL39981.1| 444|Drosophila melanogaster SD08021p
protein.
Length = 444
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 14 NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 115
N SQ Y N P + +LVNS QN DI E
Sbjct: 293 NPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326
>AF129079-1|AAD28604.1| 444|Drosophila melanogaster COP9
signalosome subunit 2 CSN2 protein.
Length = 444
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 14 NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 115
N SQ Y N P + +LVNS QN DI E
Sbjct: 293 NPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326
>AE014296-335|AAF47551.2| 858|Drosophila melanogaster CG7991-PA
protein.
Length = 858
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 355 VYLCQCARSKHQRSWYSNVYVCTR 426
V LC+C SK QR W+ YV TR
Sbjct: 821 VTLCECRESKDQRQWF---YVRTR 841
>AE014134-1594|AAF52736.1| 444|Drosophila melanogaster CG9556-PB,
isoform B protein.
Length = 444
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 14 NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 115
N SQ Y N P + +LVNS QN DI E
Sbjct: 293 NPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326
>AE014134-1593|AAN10685.1| 444|Drosophila melanogaster CG9556-PA,
isoform A protein.
Length = 444
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 14 NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 115
N SQ Y N P + +LVNS QN DI E
Sbjct: 293 NPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,729,760
Number of Sequences: 53049
Number of extensions: 498428
Number of successful extensions: 1496
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1804766976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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