Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1322
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    81   6e-16
Z49132-8|CAA88987.1|  366|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AC084153-15|AAK84589.2|  152|Caenorhabditis elegans Hypothetical...    28   4.4  
Z71179-1|CAA94888.1|  224|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 46/158 (29%), Positives = 73/158 (46%)
 Frame = +2

Query: 5   STDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLRRLFSAXXXXXXX 184
           S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V LRR+ +        
Sbjct: 15  SADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFLRRVLARDWDAIWE 74

Query: 185 XXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTC 364
                 +  +  ++L  +  +    +++K+ D++SE+A N IDD G+  W   L+ M  C
Sbjct: 75  TLNEENKQRILAKVLEMIVHETELSIKKKIADLISEIASNLIDDSGDMTWGGVLELMDHC 134

Query: 365 ASAQDPNIKEAGIRMFTSVPGVFGNRHTENLDVIKGML 478
             ++D       + +    P +FGNR    L  +K +L
Sbjct: 135 LKSEDLTGNYIALLILRGCPIIFGNRLAHFLPTLKVVL 172


>Z49132-8|CAA88987.1|  366|Caenorhabditis elegans Hypothetical
           protein ZK666.8 protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 419 VPGVFGNRHTENLDVIKGMLISA 487
           VP +FG+ HTEN + I   L+SA
Sbjct: 127 VPWIFGSGHTENFNFIVLQLLSA 149


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +2

Query: 227  LLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIR 406
            LL    D    +R   C  +S+L R H   + +   PE+L+ +         +++EA  R
Sbjct: 1123 LLPALTDREYRVRESACLALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKESVREAADR 1182

Query: 407  MFTSV 421
               S+
Sbjct: 1183 AADSI 1187


>AC084153-15|AAK84589.2|  152|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.15 protein.
          Length = 152

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 70  FCFCWNVVVCVLCLGS 23
           F FCW ++ C+ C GS
Sbjct: 116 FVFCWPILYCLCCAGS 131


>Z71179-1|CAA94888.1|  224|Caenorhabditis elegans Hypothetical
           protein F07D3.3 protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 11  DNDIRSQAEDAYNNIPTETKVVHLVNSIQNAD 106
           D D   QA    NNIP E  V+H+  S +  D
Sbjct: 149 DQDECMQAVQELNNIPVEDSVIHMTISTRFID 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,207,478
Number of Sequences: 27780
Number of extensions: 255548
Number of successful extensions: 763
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)