Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1322
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.34 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   1.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   3.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -2

Query: 480 INMPFITSKFSVWRFPNTP-GTDVNI--RIPASLMFGSCALAQVNMNCRNSGHWLLPS 316
           I+ P I+  F+   FP TP G +V +  +   + +  +  + Q    C+  G W LPS
Sbjct: 189 ISCPEISVNFA--HFPATPTGREVALIEQTIGTCVANAVVIEQPTFLCKGDGKWYLPS 244


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 482 ILTCLLSHPSFQCG 441
           ++TCL+  PS  CG
Sbjct: 10  LITCLICSPSVHCG 23


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 37  GRIQQHSNRNKSSAPSEFNSKCRHCRR 117
           G I+  + + K+  P EF  +C+  R+
Sbjct: 134 GNIEAVTTKEKAKFPQEFFPECKWSRK 160


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 318 MATTSGLSSYSSCLPVPVR 374
           +A    + S S C+P+PVR
Sbjct: 212 LAKLRNVHSSSFCIPLPVR 230


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 347 VGTQATGCCHRHQ 309
           VG  A GC + HQ
Sbjct: 320 VGNSAVGCWNEHQ 332


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 4   FNR**YQIPSRGRIQQHSNRNKSSAPSEFNSKCR 105
           FN   YQI     + Q  +  + + P E +S CR
Sbjct: 610 FNCTQYQIRDHKDVTQCISCRQGTVPDETHSACR 643


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,783
Number of Sequences: 438
Number of extensions: 3100
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)