Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1322
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    75   2e-14
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    65   2e-11
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    35   0.036
At5g16000.1 68418.m01871 leucine-rich repeat family protein / pr...    30   0.77 
At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing ...    27   5.4  
At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s...    27   9.5  
At3g27250.1 68416.m03406 expressed protein                             27   9.5  
At2g43980.1 68415.m05469 inositol 1,3,4-trisphosphate 5/6-kinase...    27   9.5  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 3/171 (1%)
 Frame = +2

Query: 2   LSTDNDIRSQAEDAYN---NIPTETKVVHLVNSIQNADIAEDVRQTAAVLLRRLFSAXXX 172
           +S+ N+ RS AE  +N       +T  + L + +Q +   E  R  AAVLLR+L +    
Sbjct: 32  MSSSNEQRSSAESLFNLAKQSNPDTLSLKLAHLLQLSPHPEG-RAMAAVLLRKLLTRDDA 90

Query: 173 XXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQF 352
                     Q+ L+  +L  +Q + ++ + +K+CD VSELA   + ++G   WPE L F
Sbjct: 91  YLWPRLSLSTQSSLKSSMLYCIQHEEAKSISKKICDTVSELASGILPENG---WPELLPF 147

Query: 353 MFTCASAQDPNIKEAGIRMFTSVPGVFGNRHTENLDVIKGMLISALQPNES 505
           +F C ++  P ++E+   +   +    G   T ++  + G+ +  L  N +
Sbjct: 148 VFQCVTSVTPKLQESAFLILAQLSQYVGETLTPHIKELHGVFLQCLSSNSA 198


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 1/169 (0%)
 Frame = +2

Query: 2   LSTDNDIRSQAEDAYNNIPTETKVVH-LVNSIQNADIAEDVRQTAAVLLRRLFSAXXXXX 178
           L  DND R QAED    +  + +VV  LV  ++ A    +VRQ AAVLLR+  +      
Sbjct: 13  LMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRKRITGHWAKL 71

Query: 179 XXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMF 358
                  +Q V ++ L+ ++ ++ S  +RR   +VVS +A+  +      +WP+ L F+F
Sbjct: 72  SPQL---KQHV-KQSLIESITVENSPPVRRASANVVSVVAKYAVPA---GEWPDLLTFLF 124

Query: 359 TCASAQDPNIKEAGIRMFTSVPGVFGNRHTENLDVIKGMLISALQPNES 505
            C+ +   + +E  + +F+S+    GN        ++ +L+  +Q   S
Sbjct: 125 QCSQSAQEDHREVALILFSSLTETIGNTFRPYFADLQALLLKCMQDESS 173


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 34.7 bits (76), Expect = 0.036
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 14  NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAA 136
           ND+  Q   A+ N+PTET + H    + NA IA DV +  A
Sbjct: 467 NDVDDQPLAAWINLPTETSIDHSPIVVNNAAIATDVEERQA 507


>At5g16000.1 68418.m01871 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 638

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -1

Query: 460 IQVFSVAISKYTWYRRKHSNTSFFDV 383
           + +  +A+  + W+R++H+  +FFDV
Sbjct: 258 VSLIFIAVGLFLWWRQRHNQNTFFDV 283


>At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing
           protein prolamin box binding factor, Zea mays,
           PID:g2393775
          Length = 194

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 58  NRNKSSAPSEFNSKCRHCRRCASNGG 135
           N NK S P     KC++C RC ++GG
Sbjct: 37  NNNKKSQP---RYKCKNCCRCWTHGG 59


>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
           similar to exostose-related protein 2, Homo sapiens,
           PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
           [GI:10443633]
          Length = 334

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -2

Query: 414 VNIRIPASLMFGSCALAQVNMNCRNSGHWLLPSSSI*FLASSETTSQTFLRKYWER 247
           V  R    L+F   A   V + CR+S  W+  S ++    S      T L   W+R
Sbjct: 28  VTARSTKFLLFCCIAFVLVTIVCRSSRPWVNSSIAVADRISGSRKGYTLLMNTWKR 83


>At3g27250.1 68416.m03406 expressed protein
          Length = 282

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 499 VWLQSRY*HAFYHI--QVFSVAIS-KYTWYRRKHSNTSFFDVWILRTG 365
           VWL +    A  H   Q F+  +  +YTW   K++ T   DVW +  G
Sbjct: 219 VWLVAEEATAAMHCNYQAFTCRVRMQYTWKETKYTKTVPCDVWKMEFG 266


>At2g43980.1 68415.m05469 inositol 1,3,4-trisphosphate 5/6-kinase
           family protein contains Pfam profile PF05770: Inositol
           1, 3, 4-trisphosphate 5/6-kinase;  contains Prosite
           PS00591: Glycosyl hydrolases family 10 active site;
           similar to inositol 1,3,4-trisphosphate 5/6-kinase
           (GI:1322038) [Homo sapiens]
          Length = 488

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 427 TWYRRKHSNTSF-FDVWILRTGTGKHEL*ELRPL 329
           TW R+K   T F FDV +++ GTG H + +L  L
Sbjct: 425 TWLRKKLDLTIFGFDV-VIQEGTGDHVIVDLNYL 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,340
Number of Sequences: 28952
Number of extensions: 231460
Number of successful extensions: 610
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)