Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1318
         (300 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BID4 Cluster: Chromosome undetermined scaffold_11, wh...    32   2.9  
UniRef50_A6BEL8 Cluster: Putative uncharacterized protein; n=2; ...    31   3.8  
UniRef50_A7TFY5 Cluster: Putative uncharacterized protein; n=1; ...    31   6.7  
UniRef50_A7BXA4 Cluster: Putative uncharacterized protein; n=1; ...    30   8.9  

>UniRef50_A0BID4 Cluster: Chromosome undetermined scaffold_11, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_11,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 359

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 9/39 (23%), Positives = 26/39 (66%)
 Frame = +1

Query: 10  VGTHYYLQKVWRQHMSNYYSYVAIGVLLFKKIKQPQISL 126
           + + +Y+ +++RQ + N+Y  + + + +F+K+ Q  ++L
Sbjct: 321 ITSSFYIHQMYRQEIKNFYMLIMLKIRIFRKVFQHTLNL 359


>UniRef50_A6BEL8 Cluster: Putative uncharacterized protein; n=2;
           Clostridiales|Rep: Putative uncharacterized protein -
           Dorea longicatena DSM 13814
          Length = 613

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 16  THYYLQKVWRQHMSNYYS-YVAIGVLLFKKIKQPQISLKFLLKTRAEPER 162
           T Y +  V ++H++N Y  ++A+ ++ + ++ Q +   K+ L+    P R
Sbjct: 362 TEYQIPFVMKEHLNNIYEHFIALDMISYLRLSQGEYDRKYFLQIANRPNR 411


>UniRef50_A7TFY5 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 2019

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 88  LLFKKIKQPQISLKFLLKTRAEPERAACIGNKMMA 192
           LL+K +K+   +L  +LK   EPE  + +GNK+++
Sbjct: 424 LLYKSLKKESDALSLVLKDSNEPEIISLLGNKIIS 458


>UniRef50_A7BXA4 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. PS
          Length = 721

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 16  THYYLQKVWRQHMSNYYSYVAIGVLLFKKIKQPQISLKFLLK 141
           + YY Q+V + +  + Y+ VA+G  L K+  + +  LK LL+
Sbjct: 576 SQYYYQRVLKLYPQDTYAVVALGNTLDKRSPESESQLKLLLE 617


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 332,270,047
Number of Sequences: 1657284
Number of extensions: 6265077
Number of successful extensions: 12616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12615
length of database: 575,637,011
effective HSP length: 76
effective length of database: 449,683,427
effective search space used: 10342718821
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)