Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1318
         (300 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.18 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   0.31 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   0.31 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     20   5.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   5.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   5.0  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    20   5.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    19   8.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    19   8.7  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.18
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 293 HPAGSAPRPSSGAG 252
           H  GSAP P++GAG
Sbjct: 257 HATGSAPSPTAGAG 270


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 0.31
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 229 PLLIINRHKGV*RPSFYYLYKRPAPAPL 146
           P+ +     G+ RPS Y++ K  A +P+
Sbjct: 474 PVFLQEHRNGMYRPSIYFISKTLAESPI 501


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 0.31
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 229 PLLIINRHKGV*RPSFYYLYKRPAPAPL 146
           P+ +     G+ RPS Y++ K  A +P+
Sbjct: 474 PVFLQEHRNGMYRPSIYFISKTLAESPI 501


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 265 HPGQEWTHHLRPPLL 221
           H G    H +RPP+L
Sbjct: 92  HHGPPIHHQIRPPIL 106


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 265 HPGQEWTHHLRPPLL 221
           H G    H +RPP+L
Sbjct: 92  HHGPPIHHQIRPPIL 106


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 265 HPGQEWTHHLRPPLL 221
           H G    H +RPP+L
Sbjct: 92  HHGPPIHHQIRPPIL 106


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 265 HPGQEWTHHLRPPLL 221
           H G    H +RPP+L
Sbjct: 92  HHGPPIHHQIRPPIL 106


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +2

Query: 266 TVWAHC 283
           TVW+HC
Sbjct: 147 TVWSHC 152


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +2

Query: 266 TVWAHC 283
           TVW+HC
Sbjct: 147 TVWSHC 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,755
Number of Sequences: 336
Number of extensions: 1576
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5429307
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)