BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1318 (300 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_04_0057 + 17543016-17543312 28 1.6 04_01_0619 - 8125611-8127967,8128449-8130123 27 2.7 03_05_0093 + 20737614-20737812,20737848-20738059 27 3.6 10_08_0368 + 17241156-17241308,17243745-17243993,17244104-172442... 26 4.7 04_04_0347 + 24564589-24565296 26 4.7 08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833... 25 8.3 04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899 25 8.3 04_01_0538 - 6982833-6983101,6983528-6983912,6983999-6984727 25 8.3 01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439... 25 8.3 >05_04_0057 + 17543016-17543312 Length = 98 Score = 27.9 bits (59), Expect = 1.6 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +3 Query: 222 RSGGRRWWVHSCPG*RSGRTAR 287 R GGRRWW+ CP R+GR + Sbjct: 56 RRGGRRWWL-LCPS-RAGRRGK 75 >04_01_0619 - 8125611-8127967,8128449-8130123 Length = 1343 Score = 27.1 bits (57), Expect = 2.7 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -3 Query: 295 PTR-RAVRPDRHPGQEWTHHLRPPLLIINR 209 P+R +A R R PGQ W+ +RP + + R Sbjct: 579 PSRSKAARRRRWPGQAWSQRMRPTVSPLRR 608 >03_05_0093 + 20737614-20737812,20737848-20738059 Length = 136 Score = 26.6 bits (56), Expect = 3.6 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +3 Query: 219 IRSGGRRWWVHSCPG*R 269 +RSGG +WW H G R Sbjct: 3 VRSGGSKWWQHKDEGQR 19 >10_08_0368 + 17241156-17241308,17243745-17243993,17244104-17244206, 17244291-17244390,17244556-17244666,17245302-17245407, 17245550-17245640,17245951-17246092,17246370-17246517, 17246597-17246706,17247131-17247287,17247439-17247564, 17247646-17247786 Length = 578 Score = 26.2 bits (55), Expect = 4.7 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = -3 Query: 238 LRPPLLIINRHKGV*RPSFYYLYKRPAPAPLGS--LTKISTIF 116 L PL +++ P FY+ Y RPAP L L++I +F Sbjct: 117 LGSPLKVVSEPVREVIPQFYFKYGRPAPKDLKEQCLSRIDHLF 159 >04_04_0347 + 24564589-24565296 Length = 235 Score = 26.2 bits (55), Expect = 4.7 Identities = 16/53 (30%), Positives = 21/53 (39%) Frame = -3 Query: 274 PDRHPGQEWTHHLRPPLLIINRHKGV*RPSFYYLYKRPAPAPLGSLTKISTIF 116 P PG PP + +G PS+Y Y PAPAP + + F Sbjct: 167 PAPTPGDGRHQSPPPPPSPPSADEGAQAPSYYGHYPSPAPAPAQESSSAAVAF 219 >08_02_0992 + 23380855-23381195,23382464-23382506,23383306-23383371, 23384228-23384428,23384450-23384707,23384798-23385013, 23385148-23385321,23386151-23386312,23386594-23386635 Length = 500 Score = 25.4 bits (53), Expect = 8.3 Identities = 7/18 (38%), Positives = 12/18 (66%) Frame = +1 Query: 25 YLQKVWRQHMSNYYSYVA 78 Y+ K+WR H +YS ++ Sbjct: 212 YVAKIWRNHFPQHYSSIS 229 >04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899 Length = 327 Score = 25.4 bits (53), Expect = 8.3 Identities = 9/11 (81%), Positives = 10/11 (90%) Frame = +2 Query: 227 WRAQVVGPLLP 259 WRA+ VGPLLP Sbjct: 207 WRAKTVGPLLP 217 >04_01_0538 - 6982833-6983101,6983528-6983912,6983999-6984727 Length = 460 Score = 25.4 bits (53), Expect = 8.3 Identities = 9/11 (81%), Positives = 10/11 (90%) Frame = +2 Query: 227 WRAQVVGPLLP 259 WRA+ VGPLLP Sbjct: 252 WRAKTVGPLLP 262 >01_06_1723 - 39443176-39443505,39443615-39443710,39443834-39443902, 39444381-39444443,39444521-39444598,39444725-39444838, 39445727-39445804,39446457-39446522,39446739-39446804, 39446896-39447003,39447355-39447432,39447951-39448010, 39448087-39448191,39448407-39448595,39448922-39448985, 39449244-39449385,39449494-39449654,39449952-39450076, 39450230-39450300,39450410-39450560,39450713-39450769, 39451049-39451143,39451331-39451379 Length = 804 Score = 25.4 bits (53), Expect = 8.3 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +3 Query: 78 NRCSFI*KNKTTSNIVEIFVKDPSGAGAGRLY 173 NRCS + KN+T N+ ++F + A A +LY Sbjct: 433 NRCSALTKNETLFNLFQVFQR-VLKAYASKLY 463 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,293,199 Number of Sequences: 37544 Number of extensions: 185227 Number of successful extensions: 387 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 384 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 387 length of database: 14,793,348 effective HSP length: 71 effective length of database: 12,127,724 effective search space used: 339576272 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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