Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1318
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0057 + 17543016-17543312                                         28   1.6  
04_01_0619 - 8125611-8127967,8128449-8130123                           27   2.7  
03_05_0093 + 20737614-20737812,20737848-20738059                       27   3.6  
10_08_0368 + 17241156-17241308,17243745-17243993,17244104-172442...    26   4.7  
04_04_0347 + 24564589-24565296                                         26   4.7  
08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833...    25   8.3  
04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899           25   8.3  
04_01_0538 - 6982833-6983101,6983528-6983912,6983999-6984727           25   8.3  
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439...    25   8.3  

>05_04_0057 + 17543016-17543312
          Length = 98

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 222 RSGGRRWWVHSCPG*RSGRTAR 287
           R GGRRWW+  CP  R+GR  +
Sbjct: 56  RRGGRRWWL-LCPS-RAGRRGK 75


>04_01_0619 - 8125611-8127967,8128449-8130123
          Length = 1343

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 295 PTR-RAVRPDRHPGQEWTHHLRPPLLIINR 209
           P+R +A R  R PGQ W+  +RP +  + R
Sbjct: 579 PSRSKAARRRRWPGQAWSQRMRPTVSPLRR 608


>03_05_0093 + 20737614-20737812,20737848-20738059
          Length = 136

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 219 IRSGGRRWWVHSCPG*R 269
           +RSGG +WW H   G R
Sbjct: 3   VRSGGSKWWQHKDEGQR 19


>10_08_0368 +
           17241156-17241308,17243745-17243993,17244104-17244206,
           17244291-17244390,17244556-17244666,17245302-17245407,
           17245550-17245640,17245951-17246092,17246370-17246517,
           17246597-17246706,17247131-17247287,17247439-17247564,
           17247646-17247786
          Length = 578

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 238 LRPPLLIINRHKGV*RPSFYYLYKRPAPAPLGS--LTKISTIF 116
           L  PL +++       P FY+ Y RPAP  L    L++I  +F
Sbjct: 117 LGSPLKVVSEPVREVIPQFYFKYGRPAPKDLKEQCLSRIDHLF 159


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -3

Query: 274 PDRHPGQEWTHHLRPPLLIINRHKGV*RPSFYYLYKRPAPAPLGSLTKISTIF 116
           P   PG        PP    +  +G   PS+Y  Y  PAPAP    +  +  F
Sbjct: 167 PAPTPGDGRHQSPPPPPSPPSADEGAQAPSYYGHYPSPAPAPAQESSSAAVAF 219


>08_02_0992 +
           23380855-23381195,23382464-23382506,23383306-23383371,
           23384228-23384428,23384450-23384707,23384798-23385013,
           23385148-23385321,23386151-23386312,23386594-23386635
          Length = 500

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 25  YLQKVWRQHMSNYYSYVA 78
           Y+ K+WR H   +YS ++
Sbjct: 212 YVAKIWRNHFPQHYSSIS 229


>04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899
          Length = 327

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 227 WRAQVVGPLLP 259
           WRA+ VGPLLP
Sbjct: 207 WRAKTVGPLLP 217


>04_01_0538 - 6982833-6983101,6983528-6983912,6983999-6984727
          Length = 460

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 227 WRAQVVGPLLP 259
           WRA+ VGPLLP
Sbjct: 252 WRAKTVGPLLP 262


>01_06_1723 -
           39443176-39443505,39443615-39443710,39443834-39443902,
           39444381-39444443,39444521-39444598,39444725-39444838,
           39445727-39445804,39446457-39446522,39446739-39446804,
           39446896-39447003,39447355-39447432,39447951-39448010,
           39448087-39448191,39448407-39448595,39448922-39448985,
           39449244-39449385,39449494-39449654,39449952-39450076,
           39450230-39450300,39450410-39450560,39450713-39450769,
           39451049-39451143,39451331-39451379
          Length = 804

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 78  NRCSFI*KNKTTSNIVEIFVKDPSGAGAGRLY 173
           NRCS + KN+T  N+ ++F +    A A +LY
Sbjct: 433 NRCSALTKNETLFNLFQVFQR-VLKAYASKLY 463


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,293,199
Number of Sequences: 37544
Number of extensions: 185227
Number of successful extensions: 387
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)