Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1318
         (300 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            27   2.8  
SB_37886| Best HMM Match : NGP1NT (HMM E-Value=1.2)                    26   6.5  
SB_12022| Best HMM Match : 7tm_1 (HMM E-Value=0.059)                   26   6.5  
SB_9307| Best HMM Match : Ion_trans_2 (HMM E-Value=1.8e-14)            26   6.5  
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)                   25   8.6  
SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14)       25   8.6  

>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 277 RPDRHPGQEWTHHLRPPLL 221
           RP   P Q+  HH RPPLL
Sbjct: 16  RPPLLPSQQIPHHQRPPLL 34



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 280 VRPDRHPGQEWTHHLRPPLL 221
           +RP   P Q+  HH RPPLL
Sbjct: 1   MRPILLPSQQIPHHQRPPLL 20


>SB_37886| Best HMM Match : NGP1NT (HMM E-Value=1.2)
          Length = 365

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 193 RPSFYYLYKRPAPAPLGSLTKISTIFEVVLFF*IKEHL 80
           R  F  L  RP+P  L SL  +S + E VL+  +  HL
Sbjct: 246 REHFSQLLNRPSPVSLTSL--VSKVMEHVLYSHMSHHL 281


>SB_12022| Best HMM Match : 7tm_1 (HMM E-Value=0.059)
          Length = 208

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 198 CEGHHFITYTSGPLRLRSGL*QKFQRYLRLFYFFK 94
           C    F TYT   +++ + L   F++Y  +FY  K
Sbjct: 43  CRALRFTTYTLSSIKVFNVLIVTFEKYFSIFYPMK 77


>SB_9307| Best HMM Match : Ion_trans_2 (HMM E-Value=1.8e-14)
          Length = 483

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 34  KVWRQHMSNYYSYVAIGVLLFKKIKQ 111
           K W   +S +YSY  +G L+F ++++
Sbjct: 80  KTWLIRVSLFYSYGFVGALVFHQVEK 105


>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
          Length = 759

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 288 GGQCAQTVIRGRSGPTTC 235
           GG C  T IRGRSG  TC
Sbjct: 453 GGTCV-TSIRGRSGEGTC 469


>SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14)
          Length = 594

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 271 DRHPGQEWTHHLRPPLLI 218
           D+HP  EW+ H  P  L+
Sbjct: 177 DKHPNAEWSAHFSPRNLV 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,297,539
Number of Sequences: 59808
Number of extensions: 187256
Number of successful extensions: 336
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)