Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1318
(300 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084161-4|AAK29730.3| 724|Caenorhabditis elegans Hypothetical ... 28 1.1
U49943-1|AAA93414.1| 113|Caenorhabditis elegans Hypothetical pr... 27 2.5
Z73909-2|CAD36493.1| 921|Caenorhabditis elegans Hypothetical pr... 26 4.4
Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical pr... 26 4.4
Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical pr... 26 4.4
Z73906-15|CAD36486.1| 921|Caenorhabditis elegans Hypothetical p... 26 4.4
Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical p... 26 4.4
AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein. 26 4.4
AF031841-1|AAC13677.1| 601|Caenorhabditis elegans GLY7 protein. 26 5.8
AC006774-7|AAF60620.1| 601|Caenorhabditis elegans Glycosylation... 26 5.8
U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal prote... 25 7.6
U39850-10|AAA81060.2| 439|Caenorhabditis elegans Hypothetical p... 25 7.6
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 25 7.6
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 25 7.6
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 25 7.6
>AC084161-4|AAK29730.3| 724|Caenorhabditis elegans Hypothetical
protein Y92H12A.2 protein.
Length = 724
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 262 DDGLGALPAGWER 300
DD +GALPAGWE+
Sbjct: 317 DDEIGALPAGWEQ 329
>U49943-1|AAA93414.1| 113|Caenorhabditis elegans Hypothetical
protein EGAP4.1 protein.
Length = 113
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 167 AARSGSARVFNKNFND--I*GCFIFLNKRTPI 78
+ R+G+ RVF K+ ND I C+I N +T +
Sbjct: 56 SGRTGATRVFEKDANDLTINNCYIDFNDQTAL 87
>Z73909-2|CAD36493.1| 921|Caenorhabditis elegans Hypothetical
protein D2030.10b protein.
Length = 921
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 31 QKVWRQHMSNYYSYVAIG---VLLFKKIKQPQISLKFLLK 141
+ + ++ + YYS + +G +L+FK++KQ + + LK
Sbjct: 724 KNIRQKQPAEYYSNIYVGFLNILIFKRLKQMYLKFQIALK 763
>Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical
protein D2030.10a protein.
Length = 1009
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 31 QKVWRQHMSNYYSYVAIG---VLLFKKIKQPQISLKFLLK 141
+ + ++ + YYS + +G +L+FK++KQ + + LK
Sbjct: 724 KNIRQKQPAEYYSNIYVGFLNILIFKRLKQMYLKFQIALK 763
>Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical
protein D2030.10a protein.
Length = 1009
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 31 QKVWRQHMSNYYSYVAIG---VLLFKKIKQPQISLKFLLK 141
+ + ++ + YYS + +G +L+FK++KQ + + LK
Sbjct: 724 KNIRQKQPAEYYSNIYVGFLNILIFKRLKQMYLKFQIALK 763
>Z73906-15|CAD36486.1| 921|Caenorhabditis elegans Hypothetical
protein D2030.10b protein.
Length = 921
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 31 QKVWRQHMSNYYSYVAIG---VLLFKKIKQPQISLKFLLK 141
+ + ++ + YYS + +G +L+FK++KQ + + LK
Sbjct: 724 KNIRQKQPAEYYSNIYVGFLNILIFKRLKQMYLKFQIALK 763
>Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical
protein D2030.10a protein.
Length = 1009
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 31 QKVWRQHMSNYYSYVAIG---VLLFKKIKQPQISLKFLLK 141
+ + ++ + YYS + +G +L+FK++KQ + + LK
Sbjct: 724 KNIRQKQPAEYYSNIYVGFLNILIFKRLKQMYLKFQIALK 763
>AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein.
Length = 1009
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 31 QKVWRQHMSNYYSYVAIG---VLLFKKIKQPQISLKFLLK 141
+ + ++ + YYS + +G +L+FK++KQ + + LK
Sbjct: 724 KNIRQKQPAEYYSNIYVGFLNILIFKRLKQMYLKFQIALK 763
>AF031841-1|AAC13677.1| 601|Caenorhabditis elegans GLY7 protein.
Length = 601
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 28 LQKVWRQHMSNYYSYVAIGVLL 93
LQ++WRQ +Y+ +GVL+
Sbjct: 10 LQRLWRQRGCRVATYICLGVLV 31
>AC006774-7|AAF60620.1| 601|Caenorhabditis elegans Glycosylation
related protein 7 protein.
Length = 601
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 28 LQKVWRQHMSNYYSYVAIGVLL 93
LQ++WRQ +Y+ +GVL+
Sbjct: 10 LQRLWRQRGCRVATYICLGVLV 31
>U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 15 protein.
Length = 204
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +1
Query: 10 VGTHYYLQKVWRQHMSNYYSYVAIGVLLFKKIKQPQISLKFLLKTRAEPERAACIG 177
+G + Y+Q++WR+ S+ Y +L + Q+S + PE+A +G
Sbjct: 1 MGAYKYMQEIWRKKQSDALRY----LLRIRTWHYRQLSAVHRVPRPTRPEKARRLG 52
>U39850-10|AAA81060.2| 439|Caenorhabditis elegans Hypothetical
protein F52C9.3 protein.
Length = 439
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 247 STPAPDDGLGALPAGWER 300
ST AP+ GLG + AGW R
Sbjct: 209 STLAPEYGLGDVSAGWFR 226
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 282 QCAQTVIRGRSGPTTCARHS***IDIKVC 196
QC T I+ + P TC R+S +D + C
Sbjct: 1197 QCVFTTIQNKGDPITCIRYS---VDSQYC 1222
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 262 DDGLGALPAGWER 300
DD LG LP GWE+
Sbjct: 320 DDPLGPLPEGWEK 332
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 262 DDGLGALPAGWER 300
DD LG LP GWE+
Sbjct: 320 DDPLGPLPEGWEK 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,530,180
Number of Sequences: 27780
Number of extensions: 143937
Number of successful extensions: 223
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -