Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1318
         (300 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11990.1 68418.m01402 proline-rich family protein contains pr...    28   1.0  
At1g27190.1 68414.m03312 leucine-rich repeat transmembrane prote...    26   4.1  
At5g07420.1 68418.m00849 pectinesterase family protein contains ...    25   7.1  
At1g54450.1 68414.m06211 calcium-binding EF-hand family protein ...    25   9.4  

>At5g11990.1 68418.m01402 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 181

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 274 PDRHPGQEWTHHLRPPLLIINRHKGV*RPSFYYLYKRPAPAPL 146
           P +H     +  L PP LI   H     P FYY    P P PL
Sbjct: 72  PHKHSPPPLSQSLSPPPLITVIHPPP--PRFYYFESTPPPPPL 112


>At1g27190.1 68414.m03312 leucine-rich repeat transmembrane protein
           kinase, putative similar to CLV1 receptor kinase
           GB:AAB58929 GI:2160756 from [Arabidopsis thaliana]
          Length = 601

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 295 PTRRAVRPDRHPGQEWTHH-LRPPLL 221
           PTRRA+      G  W HH  +PP L
Sbjct: 398 PTRRAIGVGAAKGLAWLHHGCQPPYL 423


>At5g07420.1 68418.m00849 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 361

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 10  VGTHYYLQKVWRQHMSNYYSY 72
           VGT  YL + W  H    YSY
Sbjct: 267 VGTGIYLGRAWMSHPKVVYSY 287


>At1g54450.1 68414.m06211 calcium-binding EF-hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 535

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 241 HLRPPLLIINRHKGV*RPSFYYLYKRPAPAPLGS--LTKISTIF 116
           +L  PL +++ H     P FY+   RP P  L    + KI+++F
Sbjct: 109 NLSSPLKVVSDHVKELIPQFYFEDGRPPPNDLKEQCIAKINSLF 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,939,634
Number of Sequences: 28952
Number of extensions: 130804
Number of successful extensions: 208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)