Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1316
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    30   0.29 
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    27   2.0  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    27   2.7  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    27   3.5  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   6.1  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    26   6.1  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 251 SVLTGEDKKKRSKQPVNNERALNGHRDLSEPKRLGTYRCDNCNVKFVSKGALRVHLLT 424
           S L GE+    S   +N     N  +  + P    T+RCD C++ FV +  L  H  T
Sbjct: 106 SELKGEESHN-SPGTLNGTSVANASKQPNMPN--ATFRCDKCDMMFVKQSGLTNHKRT 160


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 485 TCKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNK 607
           +C IC ++++  + L  HV+        ++TY    E C K
Sbjct: 205 SCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKK 245


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 353 GTYRCDNCNVKFVSKGALRVH 415
           G Y C NC   + SKG   +H
Sbjct: 109 GKYACQNCGTSYCSKGCEVIH 129


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 596 HCNKMVSSRREHWWHTYKEHP 658
           HCN++   + ++WW   + HP
Sbjct: 445 HCNRLAGDKADNWW--LRHHP 463


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 402 APFDTNLTLQLSHRYVPRRFGSDKSLWP 319
           A F T   +   + +VPRR+ S + LWP
Sbjct: 388 ASFITLAAVVFEYIHVPRRYHSARRLWP 415


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 321 PFNARSLFTGCFERFF 274
           P N RSLF GCF ++F
Sbjct: 327 PSNRRSLFIGCFLQWF 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,106
Number of Sequences: 5004
Number of extensions: 56844
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)