Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1316
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242...    30   2.1  
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994...    29   3.7  
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108...    29   3.7  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    29   3.7  
09_04_0144 + 15071723-15071993,15072078-15072632,15072671-150726...    29   4.8  
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468...    29   4.8  
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115...    28   8.5  

>02_05_0473 +
           29319824-29322511,29322659-29322820,29324133-29324249,
           29324360-29324469,29324504-29324540,29324696-29324862,
           29325002-29325089,29325163-29325270
          Length = 1158

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = +2

Query: 485 TCKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEH 655
           +C +C+  +     L RHV   H  + L+ +    C  CN    +    W H   +H
Sbjct: 498 SCAVCMDSFTNRRVLERHVQEKHGAQYLQYSTLLRCISCNSNFLNTDLLWQHIVSDH 554


>08_02_1057 +
           23995782-23996446,23998026-23998167,23998242-23999486,
           23999521-23999529
          Length = 686

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +2

Query: 263 GEDKKKRSKQPVNNERALNGHRDLSEPKR--LGTYRCDNCNVKFVSKGALRVHLLT 424
           G     +S  PV +    +  RD  E     + +Y C  CN+ F  + A   HL+T
Sbjct: 278 GTSMDSQSNLPVASATFYSHSRDQDETVADDINSYECQQCNLTFHGQSAYAHHLIT 333


>05_01_0160 +
           1081416-1081647,1081840-1082012,1082169-1082246,
           1082372-1082529,1082558-1082709,1083232-1083290,
           1083633-1083912,1084235-1084470,1084601-1084744,
           1084845-1085012
          Length = 559

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 320 GHRDLSEPKR-LGTYRCDNCNVKFVSKGALRVHLL 421
           G +  + P R +  Y+CD C+V    KG +R H+L
Sbjct: 97  GSKGAAPPARDIRRYKCDFCSVVRSKKGLIRAHVL 131


>04_04_1571 +
           34504087-34504421,34505002-34505731,34506091-34512077,
           34512493-34513964,34514114-34514377,34514761-34514978,
           34515759-34516030,34516190-34516559,34516578-34516797,
           34516819-34518931,34518941-34519193,34519269-34519401,
           34520597-34521114,34521207-34522115,34522195-34522368,
           34522833-34522882,34523963-34524035,34524413-34524477,
           34524736-34525522,34525622-34525878,34525989-34526109,
           34526315-34526956
          Length = 5320

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 377 CNYRIDMFPDVLVPTSLCGHLTRAHCLRAVSNVSS 273
           C+Y +D+F D  +  S  GHL RA  +  + N  S
Sbjct: 693 CSYDLDLFSDWPILPSTSGHLYRASTVSKLINTGS 727


>09_04_0144 +
           15071723-15071993,15072078-15072632,15072671-15072681,
           15072954-15073012,15073962-15074040
          Length = 324

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 488 CKICL--KEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWH 640
           C++ L  K+Y  P +    +L +      K+   T C HC++M  +R    WH
Sbjct: 186 CELALGEKKYYCPFKDCSALLINDNDGAEKKIRETECPHCHRMFCARCRVPWH 238


>07_03_1258 +
           25244863-25245282,25246419-25246568,25246665-25246877,
           25246979-25247068,25247311-25247424,25247881-25248150,
           25248251-25248407,25248691-25248741,25248742-25248819,
           25249357-25249457,25249832-25250002,25250136-25250210,
           25251527-25251793
          Length = 718

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 695 GGNDASIRVLLFPDVPYTYATNVPDG 618
           GG DAS+  LL P  P  YA     G
Sbjct: 43  GGGDASVAALLLPSAPMAYAVVTDPG 68


>08_02_1060 +
           24007980-24008662,24010078-24010219,24010293-24011537,
           24012453-24013040
          Length = 885

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 326 RDLSEPKRLGTYRCDNCNVKFVSKGALRVHLLT 424
           +D ++   + +Y C  CN+ F  + A   HL+T
Sbjct: 307 QDETDADDINSYECQQCNLTFHGQSAYAHHLIT 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,427,434
Number of Sequences: 37544
Number of extensions: 334446
Number of successful extensions: 865
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)