Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1316
         (714 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    31   0.027
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    28   0.25 
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   7.2  

>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 31.5 bits (68), Expect = 0.027
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 488 CKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEHP 658
           C +C   Y    +  +H    HR     E +   C  C+K+ S R+++  H    HP
Sbjct: 351 CNLCDMSYRTKLQYQKHEYEVHRISN--ENFGIKCTICHKLFSQRQDYQLHMRAIHP 405


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 28.3 bits (60), Expect = 0.25
 Identities = 15/61 (24%), Positives = 23/61 (37%)
 Frame = +2

Query: 359 YRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSNTNKTCKICLKEYELPSELLRH 538
           Y+CD C   F  K  L+ H+             AP+       C  C + +     L+RH
Sbjct: 383 YKCDQCAQTFRQKQLLKRHM----NYYHNPDYVAPTPKAKTHICPTCKRPFRHKGNLIRH 438

Query: 539 V 541
           +
Sbjct: 439 M 439



 Score = 26.2 bits (55), Expect = 1.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 488 CKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREH 631
           CK C   +    EL+RH+   H   R  +   T C++ +  +S  + H
Sbjct: 185 CKHCDNCFTTSGELIRHIRYRHTHERPHKC--TECDYASVELSKLKRH 230



 Score = 25.0 bits (52), Expect = 2.4
 Identities = 22/103 (21%), Positives = 34/103 (33%)
 Frame = +2

Query: 359 YRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSNTNKTCKICLKEYELPSELLRH 538
           Y CD C  +F    +L+ H +                      CK+C       ++L  H
Sbjct: 268 YSCDVCFARFTQSNSLKAHKMIHQVGNKPVF-----------QCKLCPTTCGRKTDLRIH 316

Query: 539 VLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEHPGRE 667
           V   H   +     P  C+ C+     R  +  H  K H G +
Sbjct: 317 VQNLHTADK-----PIKCKRCDSTFPDRYSYKMHA-KTHEGEK 353


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 213  QWPNW*NQTMSTF 175
            QWP+W  Q + TF
Sbjct: 1133 QWPSWMKQNLPTF 1145


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,111
Number of Sequences: 2352
Number of extensions: 14198
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 73177125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)