Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1316
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68160-2|CAA92290.2| 403|Caenorhabditis elegans Hypothetical pr... 36 0.029
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 36 0.038
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 36 0.038
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 34 0.12
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 34 0.12
U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical pr... 33 0.27
AL132949-5|CAB61074.1| 144|Caenorhabditis elegans Hypothetical ... 33 0.27
Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical pr... 31 0.82
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 31 0.82
AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical ... 31 1.1
Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z75540-6|CAN86598.1| 584|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z75540-3|CAD01084.1| 581|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z75540-2|CAA99848.1| 582|Caenorhabditis elegans Hypothetical pr... 30 1.4
U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger pro... 30 1.4
AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical ... 30 1.4
U39997-9|AAA81101.2| 468|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical pr... 29 2.5
AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical... 29 2.5
AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical... 29 2.5
AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial... 29 2.5
Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical pr... 29 3.3
L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z77660-2|CAB01176.1| 361|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 29 4.4
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 29 4.4
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p... 29 4.4
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 29 4.4
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr... 29 4.4
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 4.4
AY390553-1|AAQ94965.1| 239|Caenorhabditis elegans SMA-9 protein. 29 4.4
AY390541-1|AAQ94953.1| 521|Caenorhabditis elegans SMA-9 class I... 29 4.4
AY390540-1|AAQ94952.1| 405|Caenorhabditis elegans SMA-9 class I... 29 4.4
AY390539-1|AAQ94951.1| 465|Caenorhabditis elegans SMA-9 class I... 29 4.4
AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class I... 29 4.4
Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical pr... 28 5.8
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 28 5.8
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 28 5.8
U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 28 5.8
AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical... 28 5.8
AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical... 28 5.8
Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical pr... 28 7.6
U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defecti... 28 7.6
U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defecti... 28 7.6
U28736-2|AAA68307.1| 620|Caenorhabditis elegans Hypothetical pr... 28 7.6
>Z68160-2|CAA92290.2| 403|Caenorhabditis elegans Hypothetical
protein D1046.2 protein.
Length = 403
Score = 35.9 bits (79), Expect = 0.029
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +2
Query: 341 PKRLGTYRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSN-TNKTCKI--CLKEY 511
PKR + C+NC ++F++K L HL A S+ +N C C K
Sbjct: 115 PKRKSLHSCENCGMEFITKTGLTSHLKKDNSPCARVDEMAVGGSSVSNIVCPSYGCDKNV 174
Query: 512 ELPSELLRHVLTDHR 556
+L HV T+HR
Sbjct: 175 PTYLDLAIHVDTEHR 189
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical protein
M04B2.1 protein.
Length = 870
Score = 35.5 bits (78), Expect = 0.038
Identities = 22/98 (22%), Positives = 34/98 (34%)
Frame = +2
Query: 365 CDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSNTNKTCKICLKEYELPSELLRHVL 544
C C +F + L HL+ CK C K Y +L+H++
Sbjct: 755 CSRCRDRFWTYEGLERHLVMSHGLVTADLLLKAQKKEDGGRCKTCGKNYAF--NMLQHLV 812
Query: 545 TDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEHP 658
DH+ + +C+ C SS + H HP
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHP 850
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 35.5 bits (78), Expect = 0.038
Identities = 22/98 (22%), Positives = 34/98 (34%)
Frame = +2
Query: 365 CDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSNTNKTCKICLKEYELPSELLRHVL 544
C C +F + L HL+ CK C K Y +L+H++
Sbjct: 755 CSRCRDRFWTYEGLERHLVMSHGLVTADLLLKAQKKEDGGRCKTCGKNYAF--NMLQHLV 812
Query: 545 TDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEHP 658
DH+ + +C+ C SS + H HP
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHP 850
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 33.9 bits (74), Expect = 0.12
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Frame = +2
Query: 281 RSKQPVNNERALNGHRDLSEPKRLGTYRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXA 460
R N+ + R +S Y C C +F + AL H A
Sbjct: 213 RKHPDAKNDPNVTAVRYISAESPKHPYACIECGKRFTTVTALSTH-------------KA 259
Query: 461 PSDSNTNK-TCKICLKEYELPSELLRHVLTDHRK 559
S +N+ C IC K Y +PSEL +H+ H K
Sbjct: 260 RVHSQSNRFECTICHKSYPVPSELRKHIKRVHEK 293
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 33.9 bits (74), Expect = 0.12
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Frame = +2
Query: 281 RSKQPVNNERALNGHRDLSEPKRLGTYRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXA 460
R N+ + R +S Y C C +F + AL H A
Sbjct: 331 RKHPDAKNDPNVTAVRYISAESPKHPYACIECGKRFTTVTALSTH-------------KA 377
Query: 461 PSDSNTNK-TCKICLKEYELPSELLRHVLTDHRK 559
S +N+ C IC K Y +PSEL +H+ H K
Sbjct: 378 RVHSQSNRFECTICHKSYPVPSELRKHIKRVHEK 411
>U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical
protein C52E12.6 protein.
Length = 346
Score = 32.7 bits (71), Expect = 0.27
Identities = 28/103 (27%), Positives = 39/103 (37%)
Frame = +2
Query: 359 YRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSNTNKTCKICLKEYELPSELLRH 538
Y+CD C+ F K L+ H + S C IC K Y S L H
Sbjct: 109 YQCDECDRMFTLKHNLQNHFVQYHMGCKTLHKACVSSK-----CDICGKIYSAVSVLAEH 163
Query: 539 VLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEHPGRE 667
+L +H R L + C C++ ++ H KEH E
Sbjct: 164 MLNEH-NRYLDQ---IECPDCHEFFLTQTALQKH-MKEHKREE 201
>AL132949-5|CAB61074.1| 144|Caenorhabditis elegans Hypothetical
protein Y53F4B.5 protein.
Length = 144
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 503 KEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEH 655
++ L SE++ +H + +K+ YP NC +C ++ +S++E H H
Sbjct: 39 QQQSLASEMIARDRLEHIVKHVKK-YPFNCPYCRRLFASQKEVDGHQENRH 88
>Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical
protein F25D7.3 protein.
Length = 817
Score = 31.1 bits (67), Expect = 0.82
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Frame = +2
Query: 299 NNERALNGHRDLSEPKRLGT--YRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDS 472
+N+ + NG + + + G Y C +CN F L+VH+ T
Sbjct: 486 HNDSSFNGVPNYVQQQENGKTRYACKDCNKTFGQLSNLKVHVRTHTGERPFK-------- 537
Query: 473 NTNKTCKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSS 619
C+IC KE+ + L +H L +R P C+ C+K SS
Sbjct: 538 -----CEICTKEFTQLAHLQKHHLVHTGER------PHRCDICDKRFSS 575
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 461 PSDSNTNKTCKICLKEYELPSELLRHVLTDHRKRRLKETYPT 586
P+ + T+ C C K Y+ S L H+++ H+K + PT
Sbjct: 264 PATNTTSYKCTYCSKRYKTSSGLSNHMMSSHQKISDVQDAPT 305
>AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical
protein F12E12.5 protein.
Length = 330
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +2
Query: 359 YRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSNTNKTCKICLKEYELPSELLRH 538
+RC+NC +F +K L+ H +T + +K C C + + +L RH
Sbjct: 63 FRCENCEKQFTNKPNLKRHQIT-------------HSGSKSKKCSTCQRTFFREDQLQRH 109
Query: 539 VLTDHRKRRLKETYPT-NC 592
L +H K R P NC
Sbjct: 110 -LHNHLKERSHFDCPVLNC 127
>Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical
protein F45B8.4 protein.
Length = 336
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 488 CKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTY 646
CK C K ++ S L H+L +T P CE+C K + + HTY
Sbjct: 156 CKQCGKTFKRSSTLSTHLLIH------SDTRPYPCEYCGKRFHQKSDMKKHTY 202
>Z75540-6|CAN86598.1| 584|Caenorhabditis elegans Hypothetical
protein F37D6.2c protein.
Length = 584
Score = 30.3 bits (65), Expect = 1.4
Identities = 30/119 (25%), Positives = 44/119 (36%)
Frame = +2
Query: 299 NNERALNGHRDLSEPKRLGTYRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSNT 478
N++ A KRL T C CN F + VHL T +
Sbjct: 224 NSDAAQLAENSALSLKRLQT--CQFCNAVFRT-----VHLKTIHVVKCHM-----EQDHL 271
Query: 479 NKTCKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEH 655
+ TC IC E + + + L H K+ + P NC+ C S R + H ++H
Sbjct: 272 DTTCNIC--ELDFGNSI---ALNTHMKKHISGEAPYNCQKCKYRTSVRAFFYQHFIEKH 325
>Z75540-3|CAD01084.1| 581|Caenorhabditis elegans Hypothetical
protein F37D6.2b protein.
Length = 581
Score = 30.3 bits (65), Expect = 1.4
Identities = 30/119 (25%), Positives = 44/119 (36%)
Frame = +2
Query: 299 NNERALNGHRDLSEPKRLGTYRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSNT 478
N++ A KRL T C CN F + VHL T +
Sbjct: 223 NSDAAQLAENSALSLKRLQT--CQFCNAVFRT-----VHLKTIHVVKCHM-----EQDHL 270
Query: 479 NKTCKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEH 655
+ TC IC E + + + L H K+ + P NC+ C S R + H ++H
Sbjct: 271 DTTCNIC--ELDFGNSI---ALNTHMKKHISGEAPYNCQKCKYRTSVRAFFYQHFIEKH 324
>Z75540-2|CAA99848.1| 582|Caenorhabditis elegans Hypothetical
protein F37D6.2a protein.
Length = 582
Score = 30.3 bits (65), Expect = 1.4
Identities = 30/119 (25%), Positives = 44/119 (36%)
Frame = +2
Query: 299 NNERALNGHRDLSEPKRLGTYRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSNT 478
N++ A KRL T C CN F + VHL T +
Sbjct: 224 NSDAAQLAENSALSLKRLQT--CQFCNAVFRT-----VHLKTIHVVKCHM-----EQDHL 271
Query: 479 NKTCKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEH 655
+ TC IC E + + + L H K+ + P NC+ C S R + H ++H
Sbjct: 272 DTTCNIC--ELDFGNSI---ALNTHMKKHISGEAPYNCQKCKYRTSVRAFFYQHFIEKH 325
>U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger
protein PAG-3 protein.
Length = 336
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 488 CKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTY 646
CK C K ++ S L H+L +T P CE+C K + + HTY
Sbjct: 156 CKQCGKTFKRSSTLSTHLLIH------SDTRPYPCEYCGKRFHQKSDMKKHTY 202
>AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical
protein Y5F2A.4 protein.
Length = 454
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +2
Query: 479 NKTCKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWH--TYKE 652
N +C C +++ S L RHV H E T C+ C ++ + E H TY E
Sbjct: 70 NYSCTFCEEKFVQKSHLTRHVSRKHSNAPGVEVDWTACDKCGQLFKTTYEMRIHRQTYHE 129
>U39997-9|AAA81101.2| 468|Caenorhabditis elegans Hypothetical
protein F56D1.1 protein.
Length = 468
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 485 TCKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRR 625
+C+ICLK + L L +HV H + K T +H + R+
Sbjct: 351 SCEICLKTFTLRDNLRKHVRVYHSENSQKVVKSTGPKHQEQYKCDRK 397
>Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical
protein F35H8.3 protein.
Length = 422
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 314 LNGHRDLSEPKRL-GTYRCDNCNVKFVSKGALRVHL 418
+N + ++ PK L G YRC NC F +K + H+
Sbjct: 155 INDPKPVTTPKALAGLYRCTNCKTYFGNKEVYQRHI 190
Score = 25.4 bits (53), Expect(2) = 3.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 359 YRCDNCNVKFVSKGALRVHL 418
+RC NC ++F +K ++ HL
Sbjct: 200 FRCFNCGMRFANKTSMTHHL 219
Score = 22.2 bits (45), Expect(2) = 3.1
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = +2
Query: 476 TNKTCKICLKEYELPSELLRHVLTDH 553
T TC+ C++ + L H T H
Sbjct: 253 TRSTCQTCMRFFTTEDALRHHQSTAH 278
>AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 548 DHRKRRLKETYPTNCEHCNKMVSSRREH 631
DH RR +TY N EHC + +S +H
Sbjct: 133 DHVSRRPSDTYYVNHEHCLRAHTSAHQH 160
>AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 548 DHRKRRLKETYPTNCEHCNKMVSSRREH 631
DH RR +TY N EHC + +S +H
Sbjct: 133 DHVSRRPSDTYYVNHEHCLRAHTSAHQH 160
>AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial
phenylalanyl-tRNAsynthetase protein.
Length = 458
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 548 DHRKRRLKETYPTNCEHCNKMVSSRREH 631
DH RR +TY N EHC + +S +H
Sbjct: 133 DHVSRRPSDTYYVNHEHCLRAHTSAHQH 160
>Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical
protein F39B2.1 protein.
Length = 564
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 485 TCKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRRE 628
TC +C +EL RH++T H RR K+ C+ C+K+ + E
Sbjct: 384 TCPLCSLGLGCRAELHRHLMTKH-SRRSKD---FKCDTCSKLFFTESE 427
>L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical
protein C06E1.8 protein.
Length = 397
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +2
Query: 488 CKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEH 655
C IC K + S L RH + H K +Y C C K +SS H +K+H
Sbjct: 53 CSICSKVFCHSSSLSRHRMQAHFK-----SY--KCTVCRKDISSSESLRTHMFKQH 101
>Z77660-2|CAB01176.1| 361|Caenorhabditis elegans Hypothetical
protein F38H4.2 protein.
Length = 361
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = -2
Query: 356 FPDVLVPTSLCGHLTRAHCLRAVSNVSSCLLRLKH*EGFMSPIFRSPSNGQIGKIRQCLH 177
FP +L+P + H+ R + + ++S C R KH + F +GK + ++
Sbjct: 8 FPLLLLPENAKKHVLRTMDVDFLLSLSFCSKRTKHIVQSLKLKFEHFKMDLLGKTKLMIN 67
Query: 176 FRLCLLLEIF 147
FR +L +F
Sbjct: 68 FRSTTILLVF 77
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 479 NKTCKICLKEYELPSELLRHVLTDH 553
N C+IC E+ P EL H+ DH
Sbjct: 1934 NTKCQICADEFSTPIELQVHLHVDH 1958
>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
protein T05A10.1f protein.
Length = 2048
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 479 NKTCKICLKEYELPSELLRHVLTDH 553
N C+IC E+ P EL H+ DH
Sbjct: 1916 NTKCQICADEFSTPIELQVHLHVDH 1940
>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
protein T05A10.1e protein.
Length = 2101
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 479 NKTCKICLKEYELPSELLRHVLTDH 553
N C+IC E+ P EL H+ DH
Sbjct: 1969 NTKCQICADEFSTPIELQVHLHVDH 1993
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 479 NKTCKICLKEYELPSELLRHVLTDH 553
N C+IC E+ P EL H+ DH
Sbjct: 2002 NTKCQICADEFSTPIELQVHLHVDH 2026
>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical protein
T05A10.1c protein.
Length = 1692
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 479 NKTCKICLKEYELPSELLRHVLTDH 553
N C+IC E+ P EL H+ DH
Sbjct: 1560 NTKCQICADEFSTPIELQVHLHVDH 1584
>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical
protein C18H2.5 protein.
Length = 1139
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -3
Query: 709 QTSQMAAMTRLYESFSSRMFLIRMPPMFPTATNHFVA 599
Q +++ + +Y + ++ F IR+P +FP ++ H A
Sbjct: 884 QKAKIEKIKNIYLKYQNKKFRIRVPELFPVSSFHIYA 920
>AY390553-1|AAQ94965.1| 239|Caenorhabditis elegans SMA-9 protein.
Length = 239
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 479 NKTCKICLKEYELPSELLRHVLTDH 553
N C+IC E+ P EL H+ DH
Sbjct: 107 NTKCQICADEFSTPIELQVHLHVDH 131
>AY390541-1|AAQ94953.1| 521|Caenorhabditis elegans SMA-9 class Ib
protein.
Length = 521
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 479 NKTCKICLKEYELPSELLRHVLTDH 553
N C+IC E+ P EL H+ DH
Sbjct: 389 NTKCQICADEFSTPIELQVHLHVDH 413
>AY390540-1|AAQ94952.1| 405|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 405
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 479 NKTCKICLKEYELPSELLRHVLTDH 553
N C+IC E+ P EL H+ DH
Sbjct: 273 NTKCQICADEFSTPIELQVHLHVDH 297
>AY390539-1|AAQ94951.1| 465|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 465
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 479 NKTCKICLKEYELPSELLRHVLTDH 553
N C+IC E+ P EL H+ DH
Sbjct: 333 NTKCQICADEFSTPIELQVHLHVDH 357
>AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 591
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 479 NKTCKICLKEYELPSELLRHVLTDH 553
N C+IC E+ P EL H+ DH
Sbjct: 459 NTKCQICADEFSTPIELQVHLHVDH 483
>Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical
protein C18D1.1 protein.
Length = 645
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 296 VNNERALNGHRDLSEPKRLG--TYRCDNCNVKFVSKGALRVH 415
++ + + + D S +R G T+RCD C F ++ LR H
Sbjct: 340 IDENKTVIANIDTSIKEREGELTFRCDTCRTMFKTRNQLRQH 381
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 551 HRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEHPG 661
H + + NC+HCN V+ + H + Y+ H G
Sbjct: 534 HARTHIPAEKQLNCQHCN-FVTEYKHHLEYHYRNHIG 569
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 551 HRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEHPG 661
H + + NC+HCN V+ + H + Y+ H G
Sbjct: 556 HARTHIPAEKQLNCQHCN-FVTEYKHHLEYHYRNHIG 591
>U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical
protein C10A4.8 protein.
Length = 249
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 284 SKQPVNNERALNGHRDLSEPKRLGTYRCDNCNVKFVSKGALRVH 415
+++ +NN+RA + D S+ L YRCD C+ F L H
Sbjct: 145 AQKRLNNKRA--SYVDHSQKGNLKKYRCDVCDKTFSRSNTLITH 186
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 551 HRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEHPG 661
H + + NC+HCN V+ + H + Y+ H G
Sbjct: 556 HARTHIPAEKQLNCQHCN-FVTEYKHHLEYHYRNHIG 591
>AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical
protein Y22D7AL.16 protein.
Length = 233
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +2
Query: 488 CKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEH 655
C+ C K ++ EL H + +H + NC HC+K S HT H
Sbjct: 57 CRQCRKAFDSIRELAEHEIKNHEDQ-------FNCYHCDKKSESIERLAAHTAHRH 105
>AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical
protein Y55F3AM.14 protein.
Length = 662
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Frame = +2
Query: 290 QPVNNERALNGHRDLSEP--KRLGT------YRCDNCNVKFVSKGALRVHL 418
+P + + +LN H+D E RL T + CD C FV + AL++H+
Sbjct: 391 KPYSQKISLNIHQDQCEAFKNRLKTTDSQFSHNCDGCGKSFVQRIALQIHV 441
>Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical
protein T07D10.3 protein.
Length = 377
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 548 DHRKRRLKETYPTNCEHCNKMVSSRREHWWHTY-KEH 655
D +K LK Y NC CN+ SSR E+ H + ++H
Sbjct: 147 DQQKHFLKPVYICNC--CNRTWSSRNEYVAHLHGRDH 181
>U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defective
protein 9, isoformd protein.
Length = 452
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 488 CKICLKEYELPSELLRHVLTDHRKRR 565
CK C K L L +H+L H+K +
Sbjct: 95 CKFCGKSSRLKGNLTKHILKHHKKEQ 120
>U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defective
protein 9, isoformc protein.
Length = 537
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 488 CKICLKEYELPSELLRHVLTDHRKRR 565
CK C K L L +H+L H+K +
Sbjct: 78 CKFCGKSSRLKGNLTKHILKHHKKEQ 103
>U28736-2|AAA68307.1| 620|Caenorhabditis elegans Hypothetical
protein F26A10.2 protein.
Length = 620
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 488 CKICLKEYELPSELLRHVLTDHRKRRLK 571
CK C K Y+ S L +H + +K +L+
Sbjct: 78 CKFCFKTYKFRSNLYQHKCPERQKSQLR 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,740,588
Number of Sequences: 27780
Number of extensions: 320855
Number of successful extensions: 1151
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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