Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1316
(714 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc fi... 36 5e-04
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 31 0.014
L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein pro... 30 0.025
AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 28 0.076
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 28 0.10
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 25 0.71
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 25 0.71
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 25 0.71
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 24 1.2
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 3.8
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 23 3.8
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 22 5.0
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 22 5.0
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 22 5.0
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 22 5.0
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 5.0
>AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc
finger domain-Z2 isoform protein.
Length = 71
Score = 35.5 bits (78), Expect = 5e-04
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 485 TCKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEHPGR 664
TC++C K + L RHV H +R +E Y C C ++ SR H Y H R
Sbjct: 7 TCQLCGKVLCSKASLKRHVADKHAER--QEEY--RCVICERVYCSRNSLMTHIYTYHKSR 62
Query: 665 EG 670
G
Sbjct: 63 PG 64
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 30.7 bits (66), Expect = 0.014
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 488 CKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVS 616
C IC K + +P+ L RH T ++ P CE+C+K S
Sbjct: 94 CNICGKTFAVPARLTRHYRTHTGEK------PYQCEYCSKSFS 130
Score = 23.8 bits (49), Expect = 1.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 314 LNGHRDLSEPKRLGTYRCDNCNVKFVSKGALRVHL 418
L+ HR + +R Y+CD C F G L H+
Sbjct: 135 LSVHRRIHTKER--PYKCDVCERAFEHSGKLHRHM 167
Score = 23.4 bits (48), Expect = 2.2
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +2
Query: 305 ERALNGHRDLSEPKRLGT----YRCDNCNVKFVSKGALRVHLLT 424
ERA L R+ T ++C C+ F+ G L +H+ T
Sbjct: 154 ERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRT 197
>L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein
protein.
Length = 81
Score = 29.9 bits (64), Expect = 0.025
Identities = 23/95 (24%), Positives = 39/95 (41%)
Frame = +2
Query: 323 HRDLSEPKRLGTYRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSNTNKTCKICL 502
H +E + ++ C C +VS GAL++H+ T C +C
Sbjct: 5 HCAAAEGQAKKSFSCKYCEKVYVSLGALKMHIRTHTLPCK---------------CHLCG 49
Query: 503 KEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNK 607
K + P L H+ T ++ P +C+HCN+
Sbjct: 50 KAFSRPWLLQGHIRTHTGEK------PFSCQHCNR 78
>AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc
finger domain-Z3 isoform protein.
Length = 92
Score = 28.3 bits (60), Expect = 0.076
Identities = 16/68 (23%), Positives = 27/68 (39%)
Frame = +2
Query: 473 NTNKTCKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKE 652
N + C C + + L RH H + +T CE CN+ ++ H +
Sbjct: 3 NEPQECPYCRRNFSCYYSLKRHFQDKHEQ---SDTLYV-CEFCNRRYRTKNSLTTHKSLQ 58
Query: 653 HPGREGLV 676
H G G++
Sbjct: 59 HRGSSGML 66
Score = 21.8 bits (44), Expect = 6.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 651 SLYVCHQCSRRLLT 610
+LYVC C+RR T
Sbjct: 34 TLYVCEFCNRRYRT 47
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +2
Query: 359 YRCDNCNVKFVSKGALRVH 415
Y C+ CN ++ +K +L H
Sbjct: 36 YVCEFCNRRYRTKNSLTTH 54
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 27.9 bits (59), Expect = 0.10
Identities = 23/91 (25%), Positives = 31/91 (34%)
Frame = +2
Query: 359 YRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSNTNKTCKICLKEYELPSELLRH 538
+RC+ CN S LR H+ PS C IC + Y + L H
Sbjct: 3 FRCEPCNKILTSLTRLRRHIQNVHTR--------PSKE---PICNICKRVYSSLNSLRNH 51
Query: 539 VLTDHRKRRLKETYPTNCEHCNKMVSSRREH 631
HR+ E E + +REH
Sbjct: 52 KSIYHRQHSKNEQQRKEMEQMREREREQREH 82
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 25.0 bits (52), Expect = 0.71
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 560 RRLKETYPTNCEHCNK 607
RRLKETY C C K
Sbjct: 209 RRLKETYSNMCALCEK 224
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 25.0 bits (52), Expect = 0.71
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 560 RRLKETYPTNCEHCNK 607
RRLKETY C C K
Sbjct: 209 RRLKETYSNMCALCEK 224
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 25.0 bits (52), Expect = 0.71
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 560 RRLKETYPTNCEHCNK 607
RRLKETY C C K
Sbjct: 209 RRLKETYSNMCALCEK 224
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 24.2 bits (50), Expect = 1.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 302 NERALNGHRDLSEPKRLGTYRCDNCNVKFVSKGALRVHL 418
N+ LN H L + YRC NC +L++HL
Sbjct: 28 NKSMLNSH--LKSHSNVYQYRCANCTYATKYCHSLKLHL 64
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = -1
Query: 264 PVKTLRRFHEPNFQISQQWPNW*NQTMSTF*VMFIVRDILIKND 133
PV+ ++ H P F + + + ++ N +T + D+L K +
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKRE 240
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = -1
Query: 264 PVKTLRRFHEPNFQISQQWPNW*NQTMSTF*VMFIVRDILIKND 133
PV+ ++ H P F + + + ++ N +T + D+L K +
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKRE 240
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 94 KNYSSLIGNSLKNIVFY*NISNNKHNLK 177
K SSL N++ N + N +NN +N K
Sbjct: 80 KIISSLSNNTIHNNNYKYNYNNNNYNKK 107
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 94 KNYSSLIGNSLKNIVFY*NISNNKHNLK 177
K SSL N++ N + N +NN +N K
Sbjct: 80 KIISSLSNNTIHNNNYKYNYNNNNYNKK 107
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 94 KNYSSLIGNSLKNIVFY*NISNNKHNLK 177
K SSL N++ N + N +NN +N K
Sbjct: 80 KIISSLSNNTIHNNNYKYNYNNNNYNKK 107
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 94 KNYSSLIGNSLKNIVFY*NISNNKHNLK 177
K SSL N++ N + N +NN +N K
Sbjct: 80 KIISSLSNNTIHNNNYKYNYNNNNYNKK 107
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 22.2 bits (45), Expect = 5.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 512 ELPSELLRHVLTDHRKRRLK 571
E E+ R +L +H+KRR +
Sbjct: 141 EQTEEMYREMLLEHKKRRAR 160
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,571
Number of Sequences: 438
Number of extensions: 3791
Number of successful extensions: 24
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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