Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1316
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21850.1 68415.m02596 DC1 domain-containing protein contains ...    29   3.1  
At1g78640.1 68414.m09165 expressed protein ; expression supporte...    28   7.1  
At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein ...    27   9.3  
At3g50620.1 68416.m05535 nodulation protein-related contains wea...    27   9.3  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    27   9.3  

>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 772

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 338 EPKRLGTYRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSNTNKTCKICLK 505
           E K+ G Y C  CN+ F  K +  V                 +DS   +TC++C K
Sbjct: 549 EIKKYG-YHCSTCNISFHIKCSKAVIFPQQTSHNHRFYHFWIADSKITRTCRVCAK 603


>At1g78640.1 68414.m09165 expressed protein ; expression supported
           by MPSS
          Length = 487

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/89 (22%), Positives = 37/89 (41%)
 Frame = +2

Query: 296 VNNERALNGHRDLSEPKRLGTYRCDNCNVKFVSKGALRVHLLTXXXXXXXXXXXAPSDSN 475
           +N+     G++DL+E              K V +   RV  LT              +S+
Sbjct: 108 INSNVTCAGNKDLTEDIIKFKKMRSLSKEKIVEEKGTRV--LTELPPYTWTIKKTLKESD 165

Query: 476 TNKTCKICLKEYELPSELLRHVLTDHRKR 562
            N  C++ L   +  + ++RH+ TD +K+
Sbjct: 166 INHQCRLLLNTTDAENHIMRHLPTDDQKK 194


>At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 288

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = +2

Query: 254 VLTGEDKKKRSK------QPVNNERALNGHRDLSEPKRLGTYRCDNCNVKFVSKGALRVH 415
           ++   DK K++K      + +  E    G+  ++     G Y+C+ C   F S  AL  H
Sbjct: 132 MMLSRDKWKKNKSNKEVVEEIETEEESEGYNKINRATTKGRYKCETCGKVFKSYQALGGH 191


>At3g50620.1 68416.m05535 nodulation protein-related contains weak
           similarity to nodulation protein H (EC 2.8.2.-)
           (Host-specificity of nodulation protein D)
           (Swiss-Prot:P06237) [Rhizobium meliloti]
          Length = 340

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 654 CSLYVCHQCSRRLLTILLQCSQFV 583
           C LY+C  C ++L  +  Q SQ V
Sbjct: 38  CGLYICAVCLKQLSNVSFQTSQLV 61


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 351  RRFGSDKSLWPFNARSLFTGC 289
            R+FG D S W FN R +   C
Sbjct: 1933 RKFGHDGSPWEFNLRDVIRSC 1953


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,617,618
Number of Sequences: 28952
Number of extensions: 290198
Number of successful extensions: 886
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)