Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1315
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0577 + 4280590-4281225,4281749-4282102,4282214-4282412,428... 48 5e-06
08_01_0900 + 8867895-8868938,8869887-8870085,8871500-8871713,887... 48 7e-06
02_05_0403 - 28696043-28696153,28696245-28696347,28696443-286965... 48 7e-06
07_01_1136 + 10668637-10669665,10670259-10670282 47 2e-05
01_06_1695 + 39251266-39252390,39252852-39252983,39253560-392537... 44 9e-05
01_06_1694 + 39246262-39247320,39247464-39247590,39248638-392487... 41 8e-04
06_03_0983 - 26559772-26559915,26560149-26560251,26560335-265605... 41 0.001
07_03_1439 - 26556398-26556418,26556700-26557743 40 0.001
04_03_0305 - 14125193-14125421,14125666-14127104 35 0.052
04_04_1568 - 34475707-34476822,34476894-34477083,34477330-344774... 31 0.85
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180... 30 2.0
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 29 3.4
04_04_1635 - 34943881-34945233,34945321-34945524 28 6.0
04_04_0774 + 27986999-27987278,27987380-27987496,27987605-279877... 28 6.0
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 7.9
>02_01_0577 +
4280590-4281225,4281749-4282102,4282214-4282412,
4284991-4285204,4285299-4285401,4285481-4285639
Length = 554
Score = 48.4 bits (110), Expect = 5e-06
Identities = 34/114 (29%), Positives = 50/114 (43%)
Frame = +2
Query: 98 CQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAALMNGY 277
C ID TGE+ T A V S R A +R +G+ GDV+ RN + + A G
Sbjct: 43 CLIDGQTGESYTYAEVESASRRAAAGLRRMGVGKGDVVMSLLRNCPEFAFSFLGAARLGA 102
Query: 278 PITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQRENYLEAARELGLDTRVITFDG 439
T +P + HE+ + ++ + E E A E G+ V+T DG
Sbjct: 103 ATTTANPFYTPHEVHRQAEAAGARVIVTEACAVEKVREFAAERGVP--VVTVDG 154
>08_01_0900 +
8867895-8868938,8869887-8870085,8871500-8871713,
8871854-8871959,8872077-8872199
Length = 561
Score = 48.0 bits (109), Expect = 7e-06
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Frame = +2
Query: 71 CMRRRPDSV---CQIDAATGETETNASVLQRSVRLAKYMR--TLGLKPGDVLALAGRNHL 235
C R P+ C ID ATG T A V + S RLA +R LGL+ G V+ RN
Sbjct: 40 CFERLPEVAARPCLIDGATGGVLTYADVDRLSRRLAAALRRAPLGLRRGGVVMSLLRNSP 99
Query: 236 DLYIPYYAALMNGYPITGVDPLFKLHEIKS 325
+ + ++AA G +T +P+ HEI+S
Sbjct: 100 EFVLSFFAASRVGAAVTTANPMSTPHEIES 129
>02_05_0403 -
28696043-28696153,28696245-28696347,28696443-28696510,
28696582-28696727,28698038-28699124
Length = 504
Score = 48.0 bits (109), Expect = 7e-06
Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Frame = +2
Query: 86 PDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAAL 265
PD+ C I AATG T T A R A + LG+ GD + + +N ++ + ++AA
Sbjct: 55 PDAPCLIAAATGRTYTFAETRLLCRRAAAALHRLGVGHGDRVMVLLQNCVEFAVAFFAAS 114
Query: 266 MNGYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQ------NQRENYLEA-ARELGLDT-R 421
G T +P EI FK + K+ Q Q E + A +G DT
Sbjct: 115 FLGAVTTAANPFCTPQEIHKQFKASGVKLILTQSVYVDKLRQHEAFPRIDACTVGDDTLT 174
Query: 422 VITFDGDE 445
VIT D DE
Sbjct: 175 VITIDDDE 182
>07_01_1136 + 10668637-10669665,10670259-10670282
Length = 350
Score = 46.8 bits (106), Expect = 2e-05
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 1/173 (0%)
Frame = +2
Query: 86 PDSVCQIDAATGETETNASVLQRSVRLAKYMRT-LGLKPGDVLALAGRNHLDLYIPYYAA 262
P + +DAATGE + + L R LA +R+ +GL+ GDV + LD+ + Y+A
Sbjct: 59 PANPALVDAATGEAVSFQAFLSRVRALAGALRSRVGLRGGDVAFVLAPAGLDVPVLYFAL 118
Query: 263 LMNGYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQRENYLEAARELGLDTRVITFDGD 442
L G ++ +P E+ L+ +AF + L A GL T V+ D
Sbjct: 119 LSIGAVVSPANPALTPAEVSRLVSLSGASVAFAVSSTATK-LPA----GL-TTVVLLDSP 172
Query: 443 EPMSKLLXXXXXXXXXXXQPATFDLDKVYVWLISTGGTSGVLKVAAIKHKVWI 601
LL P + + GT+G +K AA+ H+ +I
Sbjct: 173 H-FRSLLMDCGQAQGQEPLPVVVVRQSETAAIQYSSGTTGRVKAAALPHRSFI 224
>01_06_1695 +
39251266-39252390,39252852-39252983,39253560-39253748,
39253887-39253954,39254080-39254182,39254387-39254509
Length = 579
Score = 44.4 bits (100), Expect = 9e-05
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Frame = +2
Query: 104 IDAATGETETNASVLQRSVRLAKYMR-TLGLKPGDVLALAGRNHLDLYIPYYAALMNGYP 280
+DAATG + + + R LA + +LGL+PGDV + + LD+ + Y+A + G
Sbjct: 79 VDAATGIAVSYPAFVARVRFLAGGLWCSLGLRPGDVALVVSPSCLDVAVLYFALMSIGVV 138
Query: 281 ITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQRENYLEAARELGLDTRVITFDGDEPMSKL 460
++ +P E +L++P IAF AAR +RV+ G E +
Sbjct: 139 VSPANPASTADEYAHQVRLSRPAIAFVAPE------VAARLPRHVSRVVI--GSEVFDR- 189
Query: 461 LXXXXXXXXXXXQPATFDLDKVYVWLISTGGTSGVLKVAAIKHK 592
L PA L+ + GT+G +K AI H+
Sbjct: 190 LASASAAGGWAAPPAVAMKQPSTAALLYSSGTTGRVKAVAITHR 233
>01_06_1694 +
39246262-39247320,39247464-39247590,39248638-39248783,
39248898-39248965,39249055-39249157,39249616-39249741
Length = 542
Score = 41.1 bits (92), Expect = 8e-04
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 1/170 (0%)
Frame = +2
Query: 86 PDSVCQIDAATGETETNASVLQRSVRLAKYMR-TLGLKPGDVLALAGRNHLDLYIPYYAA 262
P +DAATG + S L LA + +LGL+PGDV + + L++ + +A
Sbjct: 60 PGRPALVDAATGIAISYPSFLAAVRSLAGGLWCSLGLRPGDVALVVAPSRLEVPVLDFAL 119
Query: 263 LMNGYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQRENYLEAARELGLDTRVITFDGD 442
+ G ++ +P+ E L++P +AF E A +L R + D
Sbjct: 120 MSIGAVVSPANPVSTPEEYAHQVALSRPVVAFAAP-------EVAAKLPEHVRCVVIGSD 172
Query: 443 EPMSKLLXXXXXXXXXXXQPATFDLDKVYVWLISTGGTSGVLKVAAIKHK 592
E +L A D V + + GT+G +K AI H+
Sbjct: 173 E-YGRLAASDGRRAAAPAAVAVKQSDTAAV--LYSSGTTGRVKAVAITHR 219
>06_03_0983 -
26559772-26559915,26560149-26560251,26560335-26560548,
26563352-26563550,26564509-26564862,26565430-26566086
Length = 556
Score = 40.7 bits (91), Expect = 0.001
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 3/127 (2%)
Frame = +2
Query: 71 CMRRRPDSV---CQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDL 241
C + P+ C ID TG + V + S R A +R LG+ GDV+ RN +
Sbjct: 35 CFEKLPEVAARPCLIDGQTGAVYSYGEVEELSRRAAAGLRRLGVGKGDVVMSLLRNCPEF 94
Query: 242 YIPYYAALMNGYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQRENYLEAARELGLDTR 421
+ A G T +P + HEI ++ + E A + G+
Sbjct: 95 AFTFLGAARLGAATTTANPFYTPHEIHRQASAAGARVIVTEACAVEKVRGFAADRGIP-- 152
Query: 422 VITFDGD 442
V+ DGD
Sbjct: 153 VVAVDGD 159
>07_03_1439 - 26556398-26556418,26556700-26557743
Length = 354
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/94 (29%), Positives = 44/94 (46%)
Frame = +2
Query: 38 PQYHMGHLFMDCMRRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLAL 217
P+Y + H+ + R RP V DA+TG + A + S+R+A+ + GL+ G V L
Sbjct: 35 PEYILPHMLLPGRRARPAFV---DASTGAALSFAGLRALSLRVARALAAAGLRRGRVALL 91
Query: 218 AGRNHLDLYIPYYAALMNGYPITGVDPLFKLHEI 319
N L A L G ++ +PL E+
Sbjct: 92 LSPNSLHFPALSLAVLSLGAVLSAANPLLTPDEL 125
>04_03_0305 - 14125193-14125421,14125666-14127104
Length = 555
Score = 35.1 bits (77), Expect = 0.052
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = +2
Query: 89 DSVCQIDAATG-ETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAAL 265
D V ++AA G + T V + + R A+ +R++G++ G V+ +A N L +Y +
Sbjct: 48 DRVALVEAAAGGRSYTYGEVARDTARFARALRSVGVRKGHVVVVALPN-LAVYPVVSLGI 106
Query: 266 MN-GYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQ 367
M+ G +GV+P EIK + ++ K+ +
Sbjct: 107 MSAGAVFSGVNPRALAAEIKKQVEDSEAKLVVANE 141
>04_04_1568 - 34475707-34476822,34476894-34477083,34477330-34477464,
34477571-34477668,34477789-34477979,34478784-34479286,
34480169-34481568,34481655-34481855
Length = 1277
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 231 WFLPASASTSPGLRPSVRMYLANRTDRCSTDAFVSVSP 118
W LP S G++P + M +RT DAF++ P
Sbjct: 1238 WTLPQSVLALAGVKPPICMKFLSRTTNIKVDAFIAKLP 1275
>03_01_0228 +
1802038-1803265,1804207-1804245,1804638-1804783,
1804891-1804958,1805045-1805147,1805287-1805400
Length = 565
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Frame = +2
Query: 77 RRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRT--LGLKPGDVLALAGRNHLDLYIP 250
RR V +DAATG T + + A + + L+ G V + N + +
Sbjct: 46 RRHSGVVALVDAATGRRITFTELWRAVAGAASALAAHPVSLRKGHVALILSPNSVHFPVA 105
Query: 251 YYAALMNGYPITGVDPLFKLHEIKSFFKLTQPKIAF 358
AA+ G +T +PL EI +P +AF
Sbjct: 106 ALAAMSLGAVLTTANPLNTPAEIAKQVADARPVLAF 141
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 29.1 bits (62), Expect = 3.4
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Frame = +2
Query: 35 DPQYHMGHLFMDCMRRRPDSVCQIDAATGE-----TETNASVLQRSVRLAKYMRTLGLKP 199
DP + L + P +V DAA G E ++VL +V L+ G++P
Sbjct: 29 DPGLSLTDLLLRRADACPSAVALADAAAGGRALTFAELRSAVLSTAVALSS---RAGVRP 85
Query: 200 GDVLALAGRNHLDLYIPYYAALMNGYPITGVDPLFKLHEI 319
GD + L N + + ++A G T V+P + EI
Sbjct: 86 GDAVLLLAPNCVLYPVCFFAVTALGAVGTTVNPDYTPREI 125
>04_04_1635 - 34943881-34945233,34945321-34945524
Length = 518
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Frame = +2
Query: 110 AATGETETNASVLQRSV--RLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAALMNGYPI 283
A G+ + + + L V A+ G+ PG V+ALA N ++L I + A +
Sbjct: 24 AVPGKVDLSHAALDALVDAAAARLAADAGVLPGHVVALAFPNTVELVIMFLAVIRARAVA 83
Query: 284 TGVDPLFKLHEIKSFFKLTQPKIAFCQQNQRENYLEAARELGL 412
++P + E + + + ++ AA +LGL
Sbjct: 84 APLNPAYTQEEFEFYLSDSGARLLITNPEGNVAAQAAASKLGL 126
>04_04_0774 +
27986999-27987278,27987380-27987496,27987605-27987759,
27987855-27987929,27988025-27988321,27988448-27988780,
27988880-27988996
Length = 457
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 234 KWFLPASASTSPGLRPSVRMYLANRTDRCS 145
KW+LP T PGL S R L + D S
Sbjct: 250 KWWLPVPCVTKPGLTESARRDLRQKHDCAS 279
>09_02_0048 -
3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -1
Query: 614 NSLF*SKLCV*WQLLSELLMCHQC*SARRKPCLNRKWPAENQQYRHQRSQL 462
NSL + C ++LL L+ H+C ++ R+ +++ + AEN Y + L
Sbjct: 652 NSLHINTAC--FELLQMFLISHECPASLREDLVDKVFNAENGMYTYNNYTL 700
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,178,054
Number of Sequences: 37544
Number of extensions: 293993
Number of successful extensions: 689
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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