Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1315
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)            46   4e-05
SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13)           40   0.001
SB_58684| Best HMM Match : AMP-binding (HMM E-Value=0.36)              36   0.040
SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)             33   0.16 
SB_42391| Best HMM Match : Hydrolase (HMM E-Value=5.1e-17)             32   0.38 
SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13)                 29   3.5  

>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
          Length = 757

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 47/204 (23%), Positives = 79/204 (38%)
 Frame = +2

Query: 65   MDCMRRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLY 244
            +DC +R  D    +D  TGET T   ++    +    +   G+KP DV  L   N +   
Sbjct: 452  LDCCKRNGDKEALVDGPTGETYTYTDLITLIKKCGSALLQAGVKPKDVALLHLPNIMQYP 511

Query: 245  IPYYAALMNGYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQRENYLEAARELGLDTRV 424
            +  Y A   G  +T  +P + + E+      +  K            +EAAR+  ++   
Sbjct: 512  VYLYGAQAIGAVVTTANPGYTVDELAYQLIDSSAKYIITDSKLYHTAIEAARKANVEH-- 569

Query: 425  ITFDGDEPMSKLLXXXXXXXXXXXQPATFDLDKVYVWLISTGGTSGVLKVAAIKHKVWIR 604
              F+  E  + LL            P   D  +  + +  + GT+GV K     H  +I 
Sbjct: 570  -VFESVEFFNDLLKDDGSKLKGVYSPT--DPTEA-ICMPYSSGTTGVSKGVLQSHYNYI- 624

Query: 605  KANCLTLGLFELKDKDDTSQVIAL 676
              + L+LG  E    D     ++L
Sbjct: 625  -GHALSLGSKEFMQWDKRLVTLSL 647


>SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13)
          Length = 874

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/77 (27%), Positives = 40/77 (51%)
 Frame = +2

Query: 89  DSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAALM 268
           D    +D  +G++ T   +     ++A  +   G K G+VLA+   N  +  I Y+AA++
Sbjct: 31  DRTAIVDPQSGQSYTYPELKDLIHKMASALTRKGFKQGEVLAIMCPNIPEFAIAYFAAIL 90

Query: 269 NGYPITGVDPLFKLHEI 319
            G  +T ++PL+   E+
Sbjct: 91  IGGIVTSMNPLYTGREV 107


>SB_58684| Best HMM Match : AMP-binding (HMM E-Value=0.36)
          Length = 237

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 3/165 (1%)
 Frame = +2

Query: 104 IDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAALMNGYPI 283
           ID+ATG++ T + +     +    +   G + GD +A+   N ++  +  Y AL  G  +
Sbjct: 1   IDSATGKSFTFSELCTLIRKCGSVLVRRGAQIGDTMAVILPNMIEYPVVCYGALSVGMRV 60

Query: 284 TGVDPLFKLHEIKSFFKLTQPKIAFCQQNQRENYLEAARELGLDTRVITF---DGDEPMS 454
           T ++P + + E+    K +Q               +AA +     RV       G + + 
Sbjct: 61  TTLNPQYTVREMVPQLKDSQANYIITTPELIHQVNQAAAKCSCVRRVFVLADTPGHQTLY 120

Query: 455 KLLXXXXXXXXXXXQPATFDLDKVYVWLISTGGTSGVLKVAAIKH 589
             +            P  +  D  Y+  + + GT+G+ K   + H
Sbjct: 121 DQILNDDGSAFPSHVPVNWKQDVAYI--LYSSGTTGLPKGVLLTH 163


>SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)
          Length = 339

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 26/103 (25%), Positives = 47/103 (45%)
 Frame = +2

Query: 122 ETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAALMNGYPITGVDPL 301
           E  T A + + + +LA  + +LG+K GD + + G N  +  I  +     G  +  V+P 
Sbjct: 75  ERATFAELREEADQLAASLLSLGIKRGDRVGIWGPNMREWVISQFGTARIGVILVNVNPA 134

Query: 302 FKLHEIKSFFKLTQPKIAFCQQNQRENYLEAARELGLDTRVIT 430
           ++  E +   K    KIA+          +  R++ +D RV T
Sbjct: 135 YQAPEAEYALK----KIAYGLTETSPVTNQTRRDVPVDLRVST 173


>SB_42391| Best HMM Match : Hydrolase (HMM E-Value=5.1e-17)
          Length = 254

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 290 VDPLFKLHEIKSFFKLTQPKIAFCQQNQRENYLEAARELGLDTRV-ITFDGDEPMSK 457
           ++PL  L+ I S  K    KIA C  + R   + A   LGL + + +   GD+ +SK
Sbjct: 121 LEPLGDLNNIFSTLKSNNVKIAVCTADSRSGTMSALDRLGLTSMIDMVVCGDDEISK 177


>SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13)
          Length = 803

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 285 PASIHYSNYMKSKAFLN*RNQK*RFV 362
           P SIHYSN +++K FL  R    R V
Sbjct: 554 PESIHYSNQLQTKTFLKFRKSARRIV 579


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,754,846
Number of Sequences: 59808
Number of extensions: 338973
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)