Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1313
(440 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 183 1e-47
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 29 0.42
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 28 0.73
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 0.97
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 1.7
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 3.0
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 3.9
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 25 5.2
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 25 5.2
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 6.8
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 6.8
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 6.8
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 9.0
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 24 9.0
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 24 9.0
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 183 bits (445), Expect = 1e-47
Identities = 86/110 (78%), Positives = 100/110 (90%)
Frame = +1
Query: 103 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 282
+K Q S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8 QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67
Query: 283 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIAKQITSINIEPGVEVEVTIA 432
TP GEGSKTW+ ++MRIHKR+IDLHSPSEI KQITSI+IEPGVEVEVTIA
Sbjct: 68 TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 28.7 bits (61), Expect = 0.42
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 220 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 372
K+ +KGP +P K+ T ++P S + + F+ H R+I L+S + +
Sbjct: 92 KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.9 bits (59), Expect = 0.73
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 85 VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 234
+S IEKP+A SPIH + +R L+ V GA++ + VK
Sbjct: 891 LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.5 bits (58), Expect = 0.97
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 76 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 174
A V + D+EKPQ +V+ R+ L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 1.7
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 220 KLRVKGPVRMPTKI---LRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIAKQITS 390
K R G + P + LR KT G G + ++ R+ DLH E +I +
Sbjct: 785 KSRENGTIPRPLYVISHLRPLLHKTSLGVGDILLE-VNGKMITRLSDLHE-FETESEIKA 842
Query: 391 INIEPGVEVEVTI 429
+ + G+E+E+TI
Sbjct: 843 VILRDGIEMEITI 855
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 282 NSLW*RFKDLGSFSDENPQESDRPTL 359
N+ W RFK+ G + DE+ E + P+L
Sbjct: 35 NNEW-RFKNAGEYFDEDNNEEEYPSL 59
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 346 IDLHSPSEIAKQITSINIEPGVEVEVT 426
ID SPS I+ ++ S N+E G VT
Sbjct: 545 IDGESPSSISSRLPSSNLEQGSSSSVT 571
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 356 CRSITLLWILI*KRSQVFEPSPQ 288
C + L W+ KRSQ PSP+
Sbjct: 331 CLNFALAWMFEFKRSQYSNPSPE 353
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +1
Query: 274 TRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIAKQITSINIE 402
T++ PC S+ + + + +R++D + + + Q+TS+ IE
Sbjct: 150 TKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIE 192
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 6.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 96 RHRETPGRGLPYPP 137
R ETPGR LP+ P
Sbjct: 163 RANETPGRNLPFSP 176
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 6.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 277 RKTPCGEGSKTWDRFQM 327
R +P GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.6 bits (51), Expect = 6.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 231 KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDENPQESD 347
K P+ +ANQ P + N+ W + G FS+ N D
Sbjct: 916 KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 325 MRIHKRVIDLHSPSEIAKQITSINIEPGV 411
+R+H+R I L + S+ + + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.2 bits (50), Expect = 9.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -2
Query: 367 QRESVGRSLSCGFSSENDPRSLNLHHKEFYGW*YAGSWLACGLGPLHAASVS 212
+R SV + SC S N P S+ + + W LG LH +S S
Sbjct: 626 KRNSVLSNKSCASSESNTPASVKQDYDDIQSWTIIEE--IQSLGVLHLSSPS 675
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 322 QMRIHKRVIDLHSPSEIAKQITSINIEPG 408
+M+I + +ID S A +I I ++PG
Sbjct: 225 KMKISRHIIDASGQSVKADRILEIKVKPG 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,913
Number of Sequences: 5004
Number of extensions: 36962
Number of successful extensions: 102
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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