Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1313
(440 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 171 3e-43
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 170 5e-43
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 168 2e-42
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 51 4e-07
07_01_0344 - 2490700-2493249 30 0.72
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 30 0.72
12_02_0964 - 24860373-24860381,24860427-24860768,24861436-248615... 29 1.7
11_06_0743 + 26847652-26849424 29 1.7
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 29 2.2
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 28 3.8
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 27 5.1
05_05_0026 + 21645845-21647404 27 8.8
03_06_0677 + 35476009-35476014,35476974-35477474,35477574-354777... 27 8.8
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 27 8.8
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 171 bits (415), Expect = 3e-43
Identities = 79/121 (65%), Positives = 98/121 (80%)
Frame = +1
Query: 73 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 252
A + G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 253 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIAKQITSINIEPGVEVEVTIA 432
TK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++ KQITSI IEPGVEVEVTIA
Sbjct: 69 TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIA 128
Query: 433 D 435
D
Sbjct: 129 D 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 170 bits (413), Expect = 5e-43
Identities = 83/126 (65%), Positives = 101/126 (80%), Gaps = 4/126 (3%)
Frame = +1
Query: 70 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKG 237
MAAA V G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 238 PVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIAKQITSINIEPGVEV 417
PVR+PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++ KQITSI IEPGVEV
Sbjct: 61 PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEV 120
Query: 418 EVTIAD 435
EVTIAD
Sbjct: 121 EVTIAD 126
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 168 bits (408), Expect = 2e-42
Identities = 80/121 (66%), Positives = 99/121 (81%)
Frame = +1
Query: 73 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 252
A + SGK + EV HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMP
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
Query: 253 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIAKQITSINIEPGVEVEVTIA 432
TK+L ITTRK+PCGEG+ TWDRF+MR+HKRVIDL S +++ KQITSI IEPGVEVEVTI+
Sbjct: 67 TKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTIS 126
Query: 433 D 435
D
Sbjct: 127 D 127
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 51.2 bits (117), Expect = 4e-07
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +1
Query: 121 VSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEG 300
++P +IRI L S V +E C +I AK + GPV +PTK +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388
Query: 301 SKTWDRFQMRIHKRVIDLHSP-SEIAKQITSINIEPGVEVEVTI 429
+ F++R H+R+ID+ P ++ + + + GV+VEV +
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431
>07_01_0344 - 2490700-2493249
Length = 849
Score = 30.3 bits (65), Expect = 0.72
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 137 RWIGETSAWGFSMSLPDTTAAA 72
RWIG++S F++SLP T A A
Sbjct: 46 RWIGDSSPKNFTLSLPGTVATA 67
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 30.3 bits (65), Expect = 0.72
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 165 CALAREGLC*PNQWSQETEAACKGPSP 245
C LA EGL ++W++ A +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181
>12_02_0964 -
24860373-24860381,24860427-24860768,24861436-24861583,
24862070-24862089
Length = 172
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 45 SRPEFNKQHGSRCSVRQRHRETPGRGLPYPPHQDH 149
+RPE GSR + R+ R G P PPH H
Sbjct: 90 ARPEAAAGGGSRGTARRILRSASGSATPLPPHHLH 124
>11_06_0743 + 26847652-26849424
Length = 590
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +3
Query: 51 PEFNKQHGSRCSVRQRHR-ETPGRGLPYPPHQDHSYFSQCALAREGLC*PNQWSQETE 221
PE + RCS R R R P PP + + + A G P+ WS E
Sbjct: 296 PELRRARSGRCSPRCRRRARAPPSSSTSPPWPEPALPAAARTAAAGRSLPHSWSSRLE 353
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +3
Query: 138 HQDHSYFSQCALAREGLC*PNQWSQETEAACKG--PSPH---ANQDPA 266
H S +CAL R+G +W ET C G P+P +QDPA
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 72 GSRCSVRQRHRETPGRGLPYPP 137
G CS R+RHR G LP+ P
Sbjct: 73 GVTCSRRRRHRRVTGLSLPHTP 94
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 66 QHGSRCSVRQRHRETPGRGLPYPPHQDHSYFSQCALAR 179
+H SRCS R R R T P QD + + CA +
Sbjct: 676 RHSSRCSCRYRSRRTRSPSSLTPRDQDGTGDAGCATTK 713
>05_05_0026 + 21645845-21647404
Length = 519
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 218 CFLAPLIRSAQTFSSERTL 162
C L PL+RSA ++ SER L
Sbjct: 171 CRLIPLLRSASSYGSERLL 189
>03_06_0677 +
35476009-35476014,35476974-35477474,35477574-35477762,
35477925-35477945
Length = 238
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 195 PNQWSQETEAACKGPSPHANQDPAYHHP 278
PN +TEA K HA DPA P
Sbjct: 41 PNNHHGDTEALSKASPLHAGSDPAMRKP 68
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 26.6 bits (56), Expect = 8.8
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 19 TIFD*KVVYLGRNSTSNMAAAVVSGKDIEK-PQAEVSPIHRIRITLTSRNVRSLEKVCAD 195
+I + K V L + N+ SG +I+ + V+ IHR R+TL +++ S
Sbjct: 215 SILEAKDVLLHAERSWNITLPGFSGDEIKLYKKPHVNDIHRERLTLIKKSMASESNAKGS 274
Query: 196 LINGAKKQKLRVKGP 240
A QK + P
Sbjct: 275 AAQAAANQKNQTPKP 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,789,260
Number of Sequences: 37544
Number of extensions: 283470
Number of successful extensions: 728
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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