Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1313
         (440 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y11119-1|CAA72004.1|  120|Drosophila melanogaster S20 ribosomal ...   205   2e-53
AY071742-1|AAL49364.1|  120|Drosophila melanogaster RH47995p pro...   205   2e-53
AE014297-2870|AAF55809.1|  120|Drosophila melanogaster CG15693-P...   205   2e-53
AY071353-1|AAL48975.1|  120|Drosophila melanogaster RE38972p pro...   200   7e-52
AY075183-1|AAL68053.1|  388|Drosophila melanogaster AT13019p pro...    27   8.6  
AL031128-1|CAA20006.1| 5327|Drosophila melanogaster EG:49E4.1 pr...    27   8.6  
AE014298-205|AAF45622.3| 5412|Drosophila melanogaster CG3064-PB ...    27   8.6  
AE013599-3908|AAF47233.2|  388|Drosophila melanogaster CG4681-PA...    27   8.6  

>Y11119-1|CAA72004.1|  120|Drosophila melanogaster S20 ribosomal
           protein protein.
          Length = 120

 Score =  205 bits (500), Expect = 2e-53
 Identities = 98/115 (85%), Positives = 104/115 (90%), Gaps = 1/115 (0%)
 Frame = +1

Query: 94  KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 270
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 271 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIAKQITSINIEPGVEVEVTIAD 435
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEI K+ITSINIEPGVEVEVTIA+
Sbjct: 66  TTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120


>AY071742-1|AAL49364.1|  120|Drosophila melanogaster RH47995p
           protein.
          Length = 120

 Score =  205 bits (500), Expect = 2e-53
 Identities = 98/115 (85%), Positives = 104/115 (90%), Gaps = 1/115 (0%)
 Frame = +1

Query: 94  KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 270
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 271 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIAKQITSINIEPGVEVEVTIAD 435
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEI K+ITSINIEPGVEVEVTIA+
Sbjct: 66  TTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120


>AE014297-2870|AAF55809.1|  120|Drosophila melanogaster CG15693-PA
           protein.
          Length = 120

 Score =  205 bits (500), Expect = 2e-53
 Identities = 98/115 (85%), Positives = 104/115 (90%), Gaps = 1/115 (0%)
 Frame = +1

Query: 94  KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 270
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 271 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIAKQITSINIEPGVEVEVTIAD 435
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEI K+ITSINIEPGVEVEVTIA+
Sbjct: 66  TTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120


>AY071353-1|AAL48975.1|  120|Drosophila melanogaster RE38972p
           protein.
          Length = 120

 Score =  200 bits (488), Expect = 7e-52
 Identities = 96/115 (83%), Positives = 103/115 (89%), Gaps = 1/115 (0%)
 Frame = +1

Query: 94  KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 270
           KDIEKP   + + +H IRITLTSRNVRSLE VC DLINGAK Q LRV+GPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHCIRITLTSRNVRSLENVCRDLINGAKNQNLRVEGPVRMPTKTLRI 65

Query: 271 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIAKQITSINIEPGVEVEVTIAD 435
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEI K+ITSINIEPGVEVEVTIA+
Sbjct: 66  TTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120


>AY075183-1|AAL68053.1|  388|Drosophila melanogaster AT13019p
           protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 94  KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQ 219
           K + + Q +    HR  + L    +R+L++   DL+N  KKQ
Sbjct: 310 KLLREEQRDQLEAHRKELKLRDSRIRALKRQRGDLLNAYKKQ 351


>AL031128-1|CAA20006.1| 5327|Drosophila melanogaster EG:49E4.1
           protein.
          Length = 5327

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
 Frame = +1

Query: 61  TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCA--DLINGAKKQKLRVK 234
           T  ++ A   GK  +KP+AEV P+ R RI   ++  +S+++  A  D    +       +
Sbjct: 618 TGKLSKASAKGK-ADKPRAEVKPVVRSRI--DTKPPKSMDRKLAKRDEKKSSPTATPAAR 674

Query: 235 GPVRM---PTKILRITTRKTPCGEGSKTW----DRFQMRIHKRVIDLHSPSEIAKQITSI 393
            PV     P  + R  T+ +P    +K+     +R  +   ++   + + S +++++TS 
Sbjct: 675 APVAQNAKPKVLSRPATKSSPSSTPAKSAKEANNRKVLESKQQAARVQATSTVSRRVTST 734

Query: 394 NIEPGVE 414
             E  V+
Sbjct: 735 ASERRVQ 741


>AE014298-205|AAF45622.3| 5412|Drosophila melanogaster CG3064-PB
            protein.
          Length = 5412

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
 Frame = +1

Query: 61   TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCA--DLINGAKKQKLRVK 234
            T  ++ A   GK  +KP+AEV P+ R RI   ++  +S+++  A  D    +       +
Sbjct: 665  TGKLSKASAKGK-ADKPRAEVKPVVRSRI--DTKPPKSMDRKLAKRDEKKSSPTTTPAAR 721

Query: 235  GPVRM---PTKILRITTRKTPCGEGSKTW----DRFQMRIHKRVIDLHSPSEIAKQITSI 393
             PV     P  + R  T+ +P    +K+     +R  +   ++   + + S +++++TS 
Sbjct: 722  APVAQNAKPKVLSRPATKSSPSSTPAKSAKEANNRKVLESKQQAARVQATSTVSRRVTST 781

Query: 394  NIEPGVE 414
              E  V+
Sbjct: 782  ASERRVQ 788


>AE013599-3908|AAF47233.2|  388|Drosophila melanogaster CG4681-PA
           protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 94  KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQ 219
           K + + Q +    HR  + L    +R+L++   DL+N  KKQ
Sbjct: 310 KLLREEQRDQLEAHRKELKLRDSRIRALKRQRGDLLNAYKKQ 351


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,007,160
Number of Sequences: 53049
Number of extensions: 474565
Number of successful extensions: 1226
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1417837128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)