Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1313
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   175   9e-45
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical ...    28   2.6  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    28   3.5  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    27   4.6  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    27   6.0  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    27   8.0  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    27   8.0  
AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  175 bits (427), Expect = 9e-45
 Identities = 78/101 (77%), Positives = 94/101 (93%)
 Frame = +1

Query: 133 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 312
           HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTW
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76

Query: 313 DRFQMRIHKRVIDLHSPSEIAKQITSINIEPGVEVEVTIAD 435
           DRFQMRIHKR+I+LH+P+E+ +QITSI+IEPGV++EVT AD
Sbjct: 77  DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 175 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 297
           +E V A  + G KK+  + K   + PTK    +T++ P  E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


>AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical
           protein W03F11.1 protein.
          Length = 235

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 93  QRHRETPGRGLPYPPHQDHSYFSQCA 170
           Q HR  PG  +PYP   DH+ F +C+
Sbjct: 84  QGHRCYPGTRIPYP--HDHTMFLECS 107


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 106  KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 216
            + +A+ SP HRI   +TS+N       C+ L+  A++
Sbjct: 943  RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
 Frame = +3

Query: 51  PEFNKQHGSRCSVRQRHRETPGRGL-PYPPHQDHSYF 158
           P  +  H  R   R  H      G  P+PPH  H +F
Sbjct: 399 PPHHHHHDGRSPSRHGHHHHHHHGCRPFPPHHGHHHF 435


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 173 ERTL-REVRVILMRWIGETSAWGFSMSLPDTTA 78
           ERTL  E R ++MR + + S  G S+SLP   A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 70  MAAAVVSGKDIEKPQAEVSPIH 135
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 70  MAAAVVSGKDIEKPQAEVSPIH 135
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical
           protein C06C3.7 protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +1

Query: 199 INGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD-RFQMRIHKRVIDLHSPSEIA 375
           I+G K+   R+K    M  K ++I   +TP  E  K    R + RI KR  ++H  +   
Sbjct: 50  IDGQKENPKRIKMSQHMTAKEVKIPLLRTPDEEARKIEKLRREARI-KRSKEVHYDAAEQ 108

Query: 376 KQITSINIEPGVEVE 420
           +QI  +N E  V++E
Sbjct: 109 QQI-MMNYEWTVQME 122


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 51  PEFNKQHGSRCSVRQRHRETPGRGL-PYPPHQDHSYF 158
           P+  +QH ++ +  Q H   PG G  P PP Q   Y+
Sbjct: 654 PQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYY 690


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 51  PEFNKQHGSRCSVRQRHRETPGRGL-PYPPHQDHSYF 158
           P+  +QH ++ +  Q H   PG G  P PP Q   Y+
Sbjct: 654 PQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYY 690


>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 160 RNVRSLEKVC-ADLINGAKKQKLRVKGPVRMPTKILRITTRKT 285
           R+ +S  KVC   L  GAKK++        +  KIL IT  KT
Sbjct: 364 RDNKSSNKVCRTSLSGGAKKKRKERNARSEVGDKILGITETKT 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,391,691
Number of Sequences: 27780
Number of extensions: 223549
Number of successful extensions: 510
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)