Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1313
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   2.6  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   3.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 219 EAACKGPSPHANQDPAYHH 275
           E +  G SPH +Q P+ +H
Sbjct: 621 EISQDGSSPHFHQSPSQNH 639


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
          protein protein.
          Length = 166

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 88 TLQRLPCCLLNSGRD 44
          TL R PC LLN   D
Sbjct: 22 TLGRFPCLLLNGKXD 36


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 201 QWSQETEAACKGPSPHANQDP 263
           Q SQ+  +   GP P  +Q P
Sbjct: 11  QQSQQPSSGAPGPQPSPHQSP 31


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 440 YASAMVTSTSTPGS 399
           Y +A + +TSTPGS
Sbjct: 225 YTTATMATTSTPGS 238


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 42  LSRPEFNKQHGSRCSVRQRHRETPGRG 122
           ++  EFN ++  +C+ ++   E  GRG
Sbjct: 55  INESEFNDENYWQCNDKKTDIEETGRG 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,528
Number of Sequences: 438
Number of extensions: 2712
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)