Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1311
         (670 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.74 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.74 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.9  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +3

Query: 495 WLTGIFHRSGHGSNCTSTNGTNIWERVLEGFKSDFVSKI 611
           W++G   +S + ++C +     +W  +L  FK   + K+
Sbjct: 379 WMSGESFKSPYKASCWAQFKAVLWRSILAVFKEPLLIKV 417


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +3

Query: 495 WLTGIFHRSGHGSNCTSTNGTNIWERVLEGFKSDFVSKI 611
           W++G   +S + ++C +     +W  +L  FK   + K+
Sbjct: 379 WMSGESFKSPYKASCWAQFKAVLWRSILAVFKEPLLIKV 417


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 196 IAMNGS--SGFSIPSHELNDLNNGLRQSSSSSKVNKAPHTPLTN 321
           + +NG   S  +I +   ND   GL +  +SSKV  A H+   N
Sbjct: 466 VTVNGDVVSHLNITAIHTND--GGLYRCVASSKVGSADHSARIN 507


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,214
Number of Sequences: 336
Number of extensions: 3872
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)