Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1311
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 29 0.80
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 29 0.80
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 28 1.1
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 27 1.8
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 3.2
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 27 3.2
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 4.3
SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces... 26 4.3
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 25 7.5
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 25 7.5
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 25 7.5
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 9.9
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 25 9.9
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 9.9
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 28.7 bits (61), Expect = 0.80
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 486 KPNWLTGIFHRSGHGSNC 539
+P+W+ G+ GHGSNC
Sbjct: 132 RPHWVDGVNVACGHGSNC 149
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.7 bits (61), Expect = 0.80
Identities = 24/96 (25%), Positives = 50/96 (52%)
Frame = +1
Query: 37 EPKGKFTN*NL*TTSFRLPSTMHSNKSGRV*E*NHSETMLITTFFNVP*FSLSIAMNGSS 216
+P KF+ N +TS+ +PS+ N+ ++S + +T+ P SL+ +++ +S
Sbjct: 887 KPTFKFSTSNSGSTSYSIPSSSSRNEGTT----SYSSNITVTSSTLKP--SLTSSVSTAS 940
Query: 217 GFSIPSHELNDLNNGLRQSSSSSKVNKAPHTPLTNA 324
+ S N L+ + SSSS ++++ + TN+
Sbjct: 941 SYIASSASSNTLSTEPKTFSSSSTLSESISSINTNS 976
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 407 PNFTLFHIDNNRDSTLPLRSIESSALSRAFVS 312
P F LFH D NR +T L S++S R +S
Sbjct: 21 PCFFLFHNDENRTTTSNLDSVKSKKKRRKTIS 52
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 223 SIPSHELNDLNNGLRQSSSSSKVNKAPHTPLTNARDNAEDSIDL 354
S H+L +L + + S S + N A H PL+ D++ +
Sbjct: 155 SSTQHQLTELKDVMHSMSDSHEQNNALHPPLSRTTSFVADNVSV 198
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +1
Query: 223 SIPSHELNDLNNGLRQSSSSSKVNKAP-HTPLTNARDNAEDSIDLKGKV---ESRLLS 384
+IP LN+LNN + + + + V++ P LT+ + + +DL+ V SRL+S
Sbjct: 406 TIPDDGLNELNNNVVEKAEPAPVSEIPLSKTLTSHKIVPKHQVDLENYVFTEGSRLMS 463
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = -1
Query: 604 LTKSDLNPSNTLSHIFVPLVDVQLLPCPLLWKIPVSQ 494
L+KS N LSH V V Q LP PLL+ IP Q
Sbjct: 75 LSKSQFNEW-FLSHNGVDPVQAQTLPDPLLFDIPDHQ 110
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +1
Query: 367 ESRLLSMWNNVKFGWT---VKLK-TNFSKESPVWLL 462
E R ++++ + F W +K TN+ KES VWLL
Sbjct: 173 EVRYANIFSKLSFSWISSFIKFGYTNYLKESDVWLL 208
>SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 72
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 265 LGHYLNRLVHDSEY*NRLNHSLQLTMRTMVH*KMLLSTWFHY 140
LG ++ + +E RLNHSLQL + ++ ++ W +Y
Sbjct: 13 LGRIISNVEKLNESITRLNHSLQLINMSNMNVELASQMWANY 54
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +3
Query: 441 RISGLVVGPMLSPKIKPNWLTGIFH------RSGHGSNCTSTNGTNIWERVLEGFKSDFV 602
R S L+ + K++ L G+F + + SN +GT + VLE K
Sbjct: 505 RTSNLLRASQVDNKVENEALMGLFETFVKIKKFEYESNALLVSGTGYYNVVLETLKKSSS 564
Query: 603 SKIWMTYRREFPTM 644
+ + M Y +++ T+
Sbjct: 565 NILIMPYLKDYKTI 578
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 396 CKIWMDSKIKNQLF*RISGLVVGPM 470
C IW +++ NQLF SGL + P+
Sbjct: 362 CWIWPKNRVVNQLFGYNSGLGILPL 386
>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
Nse5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 476 TEN*AQLAHWNLPQKWAWKQLHINQWNKYMGEGIR 580
T+ QL +LP+ ++LH+ W ++G +R
Sbjct: 298 TKQLTQLLPTSLPKNKIRQKLHLRAWVSFLGSALR 332
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -3
Query: 452 TGDSLEKLVFNFTVHPNFTLFH 387
T D + + N HPN+ FH
Sbjct: 422 TRDEISNYLLNIQAHPNYQTFH 443
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 460 LGRCYHRKLSPTGSLESSTEVGMEAT 537
+G+C LSP E S E +EAT
Sbjct: 163 IGKCNMNNLSPDHYCEKSAESSLEAT 188
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 328 DNAEDSIDLKGKVESRLLSMWNNVKFGWTVKLKTNFSKESPVWLLGRC 471
DN ++ L GK ES + +G T KL T S E +WL G+C
Sbjct: 1226 DNINVTLVLSGK-ESE-----SKKNYGVTEKLATPPSHEPRLWLNGKC 1267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,869
Number of Sequences: 5004
Number of extensions: 64812
Number of successful extensions: 176
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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