Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1311
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522...    36   0.022
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958...    35   0.051
07_03_0229 + 15506772-15508304                                         31   1.1  
08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984...    28   7.7  
04_04_1216 + 31811403-31812267,31813187-31813877,31813981-318141...    28   7.7  

>04_04_1624 -
           34849385-34849410,34849748-34851052,34852121-34852294,
           34852386-34852456,34852563-34852618,34853047-34853185,
           34853310-34853695,34853801-34853851,34853936-34854021,
           34854112-34854553,34856241-34856315,34856457-34856593,
           34856679-34856838,34856917-34857012,34857093-34857247,
           34857900-34858032
          Length = 1163

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 585 FKSDFVSKIWMTYRREFPTMTGSTFTTD 668
           F  DF S+IW+TYRR F  ++ S +T+D
Sbjct: 385 FLEDFSSRIWITYRRGFDAISDSKYTSD 412


>03_03_0216 +
           15495395-15495566,15495648-15495733,15495824-15495874,
           15496005-15496390,15496760-15496898,15497540-15497595,
           15497712-15497782,15497876-15498081
          Length = 388

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 585 FKSDFVSKIWMTYRREFPTMTGSTFTTD 668
           F  DF S+IW+TYR+ F  ++ S +T+D
Sbjct: 43  FLEDFSSRIWITYRKGFDAISDSKYTSD 70


>07_03_0229 + 15506772-15508304
          Length = 510

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -1

Query: 325 ERLSVGYEVLCLPSKTTNFALGHYLNRLVHDSEY*NRLNHSLQLT 191
           E +S+ +E +   +KTT+ AL   + RLVH S+   +L H +  T
Sbjct: 294 EMVSLCWEFMNAAAKTTSTALEWTMARLVHHSDIQRKLRHDIAKT 338


>08_02_0146 -
           13195691-13196658,13197613-13197809,13198002-13198479,
           13199660-13199782,13200139-13200466
          Length = 697

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 407 PNFTLFHIDNNRDSTLPLRSIESSALSRAF 318
           PN  ++H+ N R+ T+PL++IE S +  A+
Sbjct: 566 PN-VVYHLYNCRELTIPLQTIEESRVGGAY 594


>04_04_1216 +
           31811403-31812267,31813187-31813877,31813981-31814131,
           31814289-31814351,31814590-31814664,31814934-31815032
          Length = 647

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 193 SIAMNGSSGFSIPSH-ELNDLNNGLRQSSSSSKVNKAPHTPLTNARDNAEDS 345
           S   + SS FS  S+ + + +N+G+  S S+SK  K   TP  +A  + E+S
Sbjct: 296 SCITSSSSRFSHASNSKFSLMNHGVLMSQSTSKSKKFAQTPNYSASKSMEES 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,995
Number of Sequences: 37544
Number of extensions: 371077
Number of successful extensions: 859
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)