Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1311
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59356| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_22060| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_57725| Best HMM Match : Peptidase_C54 (HMM E-Value=3.8e-05)         29   3.4  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_46783| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0017)          29   4.5  
SB_39035| Best HMM Match : Gemini_C4 (HMM E-Value=1.7)                 28   7.9  

>SB_59356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = +1

Query: 325 RDNAEDSIDLKGKVESRLLSMWNNVKFGWTVKLKTNFSKESPVWLLGRCYHRKLSPTGSL 504
           R     ++D++G V++    M   V    T K++  F +   VW   +  H+KL+PT  +
Sbjct: 273 RTGRTGTLDVRGSVKAAEKDMKYEVLPPITTKMQGPFREPQEVW---KQRHKKLNPTLRV 329

Query: 505 ESSTEVGMEATAHQPMEQ 558
           ++S     +A A    E+
Sbjct: 330 DTSYTSAEQARAEMKAEE 347


>SB_22060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
 Frame = +1

Query: 184 FSLSIAMNGSSGFSIPSHELNDLNNGLRQSSSSSKVNKAPHTPLTNARDNAE-DSIDLKG 360
           F+   + +GS    IP     DL   +      ++  K    P     D  + DS DLKG
Sbjct: 435 FNADASKDGSILLKIPKKFSEDLIEDVESKKKKAESKKQMPRPKEEEEDEDDADSRDLKG 494

Query: 361 KVESRLLSMWNNVKFGWTVKLKTN 432
           K   RL S  +     W +  K N
Sbjct: 495 KHLPRLSSGNSPTISSWVISGKKN 518


>SB_57725| Best HMM Match : Peptidase_C54 (HMM E-Value=3.8e-05)
          Length = 223

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +1

Query: 328 DNAEDSIDLKGKVESRLLSMWNNVKF 405
           D+ E+ +    K+++R++SMWNN+K+
Sbjct: 42  DSDEEDLFDSEKLKTRIVSMWNNMKY 67


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/55 (40%), Positives = 24/55 (43%)
 Frame = +1

Query: 187  SLSIAMNGSSGFSIPSHELNDLNNGLRQSSSSSKVNKAPHTPLTNARDNAEDSID 351
            SLSI    SS  S P H     N G  QS SSS +    H P+    DN E   D
Sbjct: 3118 SLSIGSASSSARSSPVH----FNLGRAQSPSSSSLLPRSHEPVPILSDNYEPLSD 3168


>SB_46783| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0017)
          Length = 322

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 550 LVDVQLLPCPLLWKIPVSQLGLIFGDNIGPTTKPEI 443
           L+DV L   PLLWK      GL+  D++  T +P I
Sbjct: 238 LLDVFLTNYPLLWKSGRVHKGLVRSDHLVVTVQPTI 273


>SB_39035| Best HMM Match : Gemini_C4 (HMM E-Value=1.7)
          Length = 481

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -1

Query: 619 VIHILLTKSDLN--PSNTLSHIFVPLVDVQLLPCPLLWKIPVSQLG-LIFGDNIGPTTKP 449
           VI I  +++ +   PS  LSH  V     +L P PL W  P+S    + F DN    T+ 
Sbjct: 116 VISIRFSRNGIKHGPSKPLSHRTVTFHGSRL-PAPLQWTFPISARNPMCFHDNTPVKTEA 174

Query: 448 EI 443
            I
Sbjct: 175 SI 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,952,466
Number of Sequences: 59808
Number of extensions: 441401
Number of successful extensions: 1024
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)