Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1311
         (670 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069453-1|AAL39598.1|  653|Drosophila melanogaster LD17482p pro...    79   4e-15
AE014297-2022|AAF55180.2|  668|Drosophila melanogaster CG6194-PA...    79   4e-15
AE014298-698|AAF46000.1|  150|Drosophila melanogaster CG12680-PA...    31   1.4  
AY122065-1|AAM52577.1| 1124|Drosophila melanogaster AT07927p pro...    29   4.3  
AE014134-3169|AAS64723.1| 1124|Drosophila melanogaster CG33316-P...    29   4.3  
AE014134-3168|AAS64722.1| 1249|Drosophila melanogaster CG33316-P...    29   4.3  
AY113255-1|AAM29260.1|  283|Drosophila melanogaster AT14585p pro...    29   5.7  
AE014297-4190|AAF56755.2|  283|Drosophila melanogaster CG5017-PA...    29   5.7  
AY119121-1|AAM50981.1|  604|Drosophila melanogaster RE20036p pro...    28   10.0 

>AY069453-1|AAL39598.1|  653|Drosophila melanogaster LD17482p
           protein.
          Length = 653

 Score = 79.4 bits (187), Expect = 4e-15
 Identities = 32/51 (62%), Positives = 45/51 (88%), Gaps = 1/51 (1%)
 Frame = +1

Query: 364 VESRLLSMWNNVKFGWTVKLK-TNFSKESPVWLLGRCYHRKLSPTGSLESS 513
           +ES+L++MW+NVK+GW+ K++ T+FSKE PVWLLGRCYHR+ +P  S+ESS
Sbjct: 131 MESKLVAMWHNVKYGWSGKMRQTSFSKEQPVWLLGRCYHRRFTPPVSMESS 181



 Score = 61.7 bits (143), Expect = 9e-10
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +3

Query: 471 LSPKIKPNWLTGIFHRSGHGSNCTSTN-GTNIWERVLEGFKSDFVSKIWMTYRREFPTMT 647
           L P + P  +  I      G +      G   WE  +EGF+ DF S+IWMTYRREFP M 
Sbjct: 212 LYPALNPQQIDEIVVPQELGMDAVENQVGEQPWEEGIEGFRRDFYSRIWMTYRREFPIMN 271

Query: 648 GSTFTTD 668
           GS +T+D
Sbjct: 272 GSNYTSD 278


>AE014297-2022|AAF55180.2|  668|Drosophila melanogaster CG6194-PA
           protein.
          Length = 668

 Score = 79.4 bits (187), Expect = 4e-15
 Identities = 32/51 (62%), Positives = 45/51 (88%), Gaps = 1/51 (1%)
 Frame = +1

Query: 364 VESRLLSMWNNVKFGWTVKLK-TNFSKESPVWLLGRCYHRKLSPTGSLESS 513
           +ES+L++MW+NVK+GW+ K++ T+FSKE PVWLLGRCYHR+ +P  S+ESS
Sbjct: 146 MESKLVAMWHNVKYGWSGKMRQTSFSKEQPVWLLGRCYHRRFTPPVSMESS 196



 Score = 61.7 bits (143), Expect = 9e-10
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +3

Query: 471 LSPKIKPNWLTGIFHRSGHGSNCTSTN-GTNIWERVLEGFKSDFVSKIWMTYRREFPTMT 647
           L P + P  +  I      G +      G   WE  +EGF+ DF S+IWMTYRREFP M 
Sbjct: 227 LYPALNPQQIDEIVVPQELGMDAVENQVGEQPWEEGIEGFRRDFYSRIWMTYRREFPIMN 286

Query: 648 GSTFTTD 668
           GS +T+D
Sbjct: 287 GSNYTSD 293


>AE014298-698|AAF46000.1|  150|Drosophila melanogaster CG12680-PA
           protein.
          Length = 150

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
 Frame = -3

Query: 206 FIAIDNENYGTLKNVVINMVSL*FHSQTRPDLF-ECIVE-----GSLNDVVH-KFQLVNL 48
           F  +D+    T+K  V +M    FH Q   DL  EC++E     G LND++  +  +++ 
Sbjct: 51  FFCLDDSTNETIKLDVAHMYCFPFHIQLPDDLMQECLIENEMTNGFLNDILRTRRGIIHY 110

Query: 47  PFGS 36
            FGS
Sbjct: 111 TFGS 114


>AY122065-1|AAM52577.1| 1124|Drosophila melanogaster AT07927p
           protein.
          Length = 1124

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 187 SLSIAMNGSSGFSIPSHELNDLNNGLRQSSSSSKVNKAPH--TPLTNARDN 333
           S + +   SSG S  +H  N+ NN    S   +K++ +PH      N RDN
Sbjct: 600 SSAASQASSSGGSTTTHAQNNNNNNNNNSGGGAKMDGSPHHRPGSRNGRDN 650


>AE014134-3169|AAS64723.1| 1124|Drosophila melanogaster CG33316-PB,
           isoform B protein.
          Length = 1124

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 187 SLSIAMNGSSGFSIPSHELNDLNNGLRQSSSSSKVNKAPH--TPLTNARDN 333
           S + +   SSG S  +H  N+ NN    S   +K++ +PH      N RDN
Sbjct: 600 SSAASQASSSGGSTTTHAQNNNNNNNNNSGGGAKMDGSPHHRPGSRNGRDN 650


>AE014134-3168|AAS64722.1| 1249|Drosophila melanogaster CG33316-PA,
           isoform A protein.
          Length = 1249

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 187 SLSIAMNGSSGFSIPSHELNDLNNGLRQSSSSSKVNKAPH--TPLTNARDN 333
           S + +   SSG S  +H  N+ NN    S   +K++ +PH      N RDN
Sbjct: 725 SSAASQASSSGGSTTTHAQNNNNNNNNNSGGGAKMDGSPHHRPGSRNGRDN 775


>AY113255-1|AAM29260.1|  283|Drosophila melanogaster AT14585p
           protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 510 FHRSGHGSNCTSTNGTNIWERVLEGFKSDFVSK 608
           F +  HG   T+ +  N W RVL+   ++F+SK
Sbjct: 80  FRKQNHGDVETNQSVPNFWLRVLKASYTEFISK 112


>AE014297-4190|AAF56755.2|  283|Drosophila melanogaster CG5017-PA
           protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 510 FHRSGHGSNCTSTNGTNIWERVLEGFKSDFVSK 608
           F +  HG   T+ +  N W RVL+   ++F+SK
Sbjct: 80  FRKQNHGDVETNQSVPNFWLRVLKASYTEFISK 112


>AY119121-1|AAM50981.1|  604|Drosophila melanogaster RE20036p
           protein.
          Length = 604

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 534 NCTSTNGTNIWERVLEGFKSDFVSKIWMTYRREFPTMTGSTFT 662
           NC  + G  +W+R++   +S +    W+T  + F  +  S  T
Sbjct: 243 NCGWSEGQKLWQRLIINCRSYYGCSSWLTVDKTFCAVAKSRMT 285


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,298,940
Number of Sequences: 53049
Number of extensions: 646816
Number of successful extensions: 1770
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1768
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)