Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1311
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical pr...    38   0.005
AL110500-3|CAB54483.1|  493|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in ge...    29   2.3  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    29   2.3  
Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U23168-12|AAC38812.2|  443|Caenorhabditis elegans Hypothetical p...    28   6.9  
U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidas...    27   9.1  
AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical...    27   9.1  

>Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical
           protein ZK792.8 protein.
          Length = 521

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 579 EGFKSDFVSKIWMTYRREFPTMTGSTFTTD 668
           E F SD+ S++W+TYR +FP +  +  TTD
Sbjct: 169 ENFCSDYYSRLWITYRTDFPALLDTDTTTD 198



 Score = 34.7 bits (76), Expect = 0.060
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +1

Query: 226 IPSHELNDLNNGLRQSSSSSKVNKAPHTPLTNARDNAEDSIDLKGKVESRLLSMWNNVKF 405
           +P   L+ ++  ++ + +S   +  P +   +     E     K K ++RL S WNN+K+
Sbjct: 72  VPGGNLSWMSK-IKSAGASMMGSIRPSSSSQDVHSTGEIEKHSKKKWKARLWSTWNNIKY 130

Query: 406 G--WTVKLKTNFSKESPVWLLGRCYHRKLSPTG 498
              W       +  E+ V  LGR Y   +  +G
Sbjct: 131 SSTWMSDRSDEYGGENDVVFLGRRYSTSVDESG 163


>AL110500-3|CAB54483.1|  493|Caenorhabditis elegans Hypothetical
           protein Y87G2A.3 protein.
          Length = 493

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 576 LEGFKSDFVSKIWMTYRREFPTMTGSTFTTD 668
           +E  K    S+ W TYRR+F  + G+  +TD
Sbjct: 50  IEAMKKYVTSRFWFTYRRDFSPIGGTGPSTD 80


>Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical
           protein T04H1.8 protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
 Frame = +1

Query: 166 FFNVP*FSLSIAMNGSSGFSIPSHELNDLNNGLRQSSSSSKVNKAPHTPLT--NARDNAE 339
           F+N+   S  + M G   F I      D  N L     +   +  P   ++   A  ++ 
Sbjct: 247 FYNIHEGSDGMRMRGRRSFDIGGIAFKDQKN-LTMEYQTLLSDPRPKVLVSFGTAATSSH 305

Query: 340 DSIDLKGKVESRLLSMWNNVKFGWTVKLKTNFSKESPVWLLGRCYHRKLSPTGSLESSTE 519
              +LK  + + +  M NNV F W  +++ NF+K+    L      +K  P   L +S++
Sbjct: 306 MPQNLKNSLMTAMKQM-NNVLFIWKYEMEDNFTKQEE--LTTNIIFKKFLPQTDLLASSK 362

Query: 520 VGMEAT 537
           + +  T
Sbjct: 363 IDLFVT 368


>U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform b protein.
          Length = 603

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 193 SIAMNGSSGFSIPSH-ELNDLNNGLRQSSSSSKVNKAPHTPLTNARDNAEDS 345
           S+  N    F++P   EL+D +NG R  SSS   +++ H+ ++  +  +E S
Sbjct: 442 SLPANFLKNFNMPCRGELSDGSNGRRHRSSSIASSRSKHSYMSKGKQFSESS 493


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 193 SIAMNGSSGFSIPSH-ELNDLNNGLRQSSSSSKVNKAPHTPLTNARDNAEDS 345
           S+  N    F++P   EL+D +NG R  SSS   +++ H+ ++  +  +E S
Sbjct: 442 SLPANFLKNFNMPCRGELSDGSNGRRHRSSSIASSRSKHSYMSKGKQFSESS 493


>Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical
           protein ZK792.5 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 543 STNGTNIWERVLEGFKSDFVSKIWMTY 623
           S+NG+ +W++++E    D  S +W+ +
Sbjct: 353 SSNGSRVWDKLMETCSEDARSLLWIEF 379


>U23168-12|AAC38812.2|  443|Caenorhabditis elegans Hypothetical
           protein B0228.9 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 489 PNWLTGIFHRSGHGSNCTSTNGTNIWERVLEGFKSDF-VSKIWMTY 623
           PN++ GIF  +  GS+  +++G   +E  ++  ++ F +  IW  Y
Sbjct: 96  PNYINGIFTYTAMGSDRKNSDGKWTYEASMDWNQNKFLIEYIWFPY 141


>U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical
           protein C14C11.3 protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 259 GLRQSSSSSKVNKAPHTP-LTNARDNAEDSIDLKGKVESR 375
           G+ Q +  S + K P TP L   R+N E+SID+  + ES+
Sbjct: 39  GISQRALDS-MQKEPQTPVLVQKRENFEESIDVAVEQESK 77


>AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 259 GLRQSSSSSKVNKAPHTP-LTNARDNAEDSIDLKGKVESR 375
           G+ Q +  S + K P TP L   R+N E+SID+  + ES+
Sbjct: 39  GISQRALDS-MQKEPQTPVLVQKRENFEESIDVAVEQESK 77


>AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical
           protein Y46G5A.29 protein.
          Length = 770

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 511 KIPVSQLGLIFGDNIGPTTKPEIL*KSWFLI 419
           KI V+   ++ GD  G T  PEI   S FLI
Sbjct: 282 KIQVTAASMMMGDKAGSTRAPEISHSSKFLI 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,960,827
Number of Sequences: 27780
Number of extensions: 347357
Number of successful extensions: 863
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)