Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1311
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.0  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 60  IGKFTLWFIWPKF 22
           IG   LW  WP F
Sbjct: 215 IGTIFLWLFWPSF 227


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 618 TYRREFPTMTGSTF 659
           TY+ +FPT T  TF
Sbjct: 212 TYKGDFPTETDITF 225


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 455 GCWADVITEN*AQLAHWNLPQKWAWKQLHINQWNKYMG 568
           GC + ++ EN A++      +    K + + QWN Y G
Sbjct: 306 GCNSTMLNENPARVMA--CMRSVDAKTISVQQWNSYWG 341


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 455 GCWADVITEN*AQLAHWNLPQKWAWKQLHINQWNKYMG 568
           GC + ++ EN A++      +    K + + QWN Y G
Sbjct: 306 GCNSTMLNENPARVMA--CMRSVDAKTISVQQWNSYWG 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,275
Number of Sequences: 438
Number of extensions: 3917
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)