Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1311
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59950.2 68416.m06690 autophagy 4b (APG4b) identical to autop...    43   2e-04
At3g59950.1 68416.m06691 autophagy 4b (APG4b) identical to autop...    43   2e-04
At2g44140.2 68415.m05491 autophagy 4a (APG4a) identical to autop...    37   0.011
At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to autop...    37   0.011
At4g36550.1 68417.m05190 U-box domain-containing protein low sim...    33   0.13 
At3g28470.1 68416.m03557 myb family transcription factor (MYB35)...    31   0.69 
At2g45840.1 68415.m05701 expressed protein                             29   3.7  
At2g24310.1 68415.m02906 expressed protein                             28   4.9  
At5g13180.1 68418.m01509 no apical meristem (NAM) family protein...    28   6.5  
At4g29990.1 68417.m04266 light repressible receptor protein kina...    27   8.5  

>At3g59950.2 68416.m06690 autophagy 4b (APG4b) identical to
           autophagy 4b [Arabidopsis thaliana]
           gi|19912145|dbj|BAB88384
          Length = 471

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +3

Query: 441 RISGLVVGPM---LSPKIKPNWLTGIFHRSGHGSNCTSTNGTNIWERVLEGFKSDFVSKI 611
           R    V+GP    +S      WL G+ ++   G +    +      RVL  F+ DF S I
Sbjct: 94  RFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEADAG----RVLAAFRQDFSSLI 149

Query: 612 WMTYRREFPTMTGSTFTTD 668
            MTYRR F  +  +T+T+D
Sbjct: 150 LMTYRRGFEPIGDTTYTSD 168


>At3g59950.1 68416.m06691 autophagy 4b (APG4b) identical to
           autophagy 4b [Arabidopsis thaliana]
           gi|19912145|dbj|BAB88384
          Length = 477

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +3

Query: 441 RISGLVVGPM---LSPKIKPNWLTGIFHRSGHGSNCTSTNGTNIWERVLEGFKSDFVSKI 611
           R    V+GP    +S      WL G+ ++   G +    +      RVL  F+ DF S I
Sbjct: 94  RFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEADAG----RVLAAFRQDFSSLI 149

Query: 612 WMTYRREFPTMTGSTFTTD 668
            MTYRR F  +  +T+T+D
Sbjct: 150 LMTYRRGFEPIGDTTYTSD 168


>At2g44140.2 68415.m05491 autophagy 4a (APG4a) identical to
           autophagy 4a [Arabidopsis thaliana]
           gi|19912143|dbj|BAB88383
          Length = 422

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 495 WLTGIFHRSGHGSNCTSTN-GTNIWERVLEGFKSDFVSKIWMTYRREFPTMTGSTFTTD 668
           WL G+ ++     N   T+ GT     VL   + DF SKI MTYR+ F     +T+T+D
Sbjct: 67  WLLGVCYKISADENSGETDTGT-----VLAALQLDFSSKILMTYRKGFEPFRDTTYTSD 120


>At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to
           autophagy 4a [Arabidopsis thaliana]
           gi|19912143|dbj|BAB88383
          Length = 467

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 495 WLTGIFHRSGHGSNCTSTN-GTNIWERVLEGFKSDFVSKIWMTYRREFPTMTGSTFTTD 668
           WL G+ ++     N   T+ GT     VL   + DF SKI MTYR+ F     +T+T+D
Sbjct: 112 WLLGVCYKISADENSGETDTGT-----VLAALQLDFSSKILMTYRKGFEPFRDTTYTSD 165


>At4g36550.1 68417.m05190 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 577

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
 Frame = +1

Query: 184 FSLSIAMNGSSGFSIPSH---ELNDLNNGLR-QSSSSSKVNKAPH-TPL--TNARDNAED 342
           FS+SIA  GSS ++IP H    + D N+     SSS SK++K  + TP+   ++   A D
Sbjct: 168 FSVSIASFGSSLYNIPDHSGISITDFNSSYSIDSSSYSKMSKGGYFTPMQRIDSASGAGD 227

Query: 343 SIDLKGKVESRLLSMWNNVKFGWTVKLKTNFSKESPVWLLGRCYHRKLSPTGSLE 507
           +     ++E   L    N+   W  ++K      S      R + R +SP+  LE
Sbjct: 228 TDSSHSEIEIDPLCGLTNLP--WDAQIKVVEDVRSRFEHSTRAF-RSMSPSKFLE 279


>At3g28470.1 68416.m03557 myb family transcription factor (MYB35)
           similar to Atmyb103 GB:AAD40692 from [Arabidopsis
           thaliana]; contains PFAM profile: myb DNA binding domain
           PF00249
          Length = 317

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +1

Query: 220 FSIPSHELNDLNNGLRQSSSSSKV---NKAPHTPLTN 321
           +S P+H LN   +    SSSS+ +   N+ P TP+TN
Sbjct: 199 YSHPNHLLNGTTSSCSSSSSSTSITQPNQVPQTPVTN 235


>At2g45840.1 68415.m05701 expressed protein
          Length = 523

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = +2

Query: 521 WAWKQLHINQWNK---YMGEGIRRI 586
           W W +++I +WNK    + EGI+++
Sbjct: 247 WGWPEINIKEWNKQSELISEGIKKV 271


>At2g24310.1 68415.m02906 expressed protein
          Length = 322

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 184 FSLSIAMNGSSGFSIPSHELNDLNNGLRQSSSSSKVNKAPHTPLTNAR 327
           FS++     SS  S+P+  +    + L+ SSS++K      +P  NAR
Sbjct: 113 FSMAETTLVSSSPSLPAENVRVSESNLKSSSSTAKTTPVSASPSVNAR 160


>At5g13180.1 68418.m01509 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           hypothetical protein SENU5, senescence up-regulated -
           Lycopersicon esculentum, EMBL:Z75524
          Length = 252

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -3

Query: 470 HRPNNQTGDSLEKLVFNFTVHPNFTLFHIDNNRDSTLPLRSIESSALSRAFVSGV*GALF 291
           H  NN + D +E +  + T      +F     ++ T  L  + SS  S    SGV   +F
Sbjct: 179 HNNNNNSSDQIEIITTDQTDDKTKPIFFDFMRKERTTDLNLLPSSPSSDHASSGVTTEIF 238

Query: 290 TFEDDE 273
           +  D+E
Sbjct: 239 SSSDEE 244


>At4g29990.1 68417.m04266 light repressible receptor protein kinase
           identical to light repressible receptor protein kinase
           [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 876

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 585 FKSDFVSKIWMTYRREFPTMTGSTFTTD 668
           +K DF  +IWM Y+  +     ++ T D
Sbjct: 209 YKDDFYDRIWMPYKSPYQKTLNTSLTID 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,074,564
Number of Sequences: 28952
Number of extensions: 327369
Number of successful extensions: 836
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)