Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1309
         (315 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   4.0  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    20   5.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   9.4  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 62  GRHGTTVAYIVDDSGSDHKFP 124
           G H   V  ++DD GS    P
Sbjct: 401 GYHQNEVGGVIDDGGSGQNQP 421


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 222 IRLVKHFQ*YGLLSKALGV 278
           ++L KH+    LLSK LG+
Sbjct: 4   VKLHKHYVPIILLSKILGI 22


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 62   HASPEPRLLIGR 27
            +A P+P+ ++GR
Sbjct: 2192 YAKPDPKCILGR 2203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,864
Number of Sequences: 336
Number of extensions: 872
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5836655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)